Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01626 ATGAATAGACTCATCACATTTGCAAGCTGGAAAACCGAAATTGTGGGATACATAGGAGAGTTTGAATATGTTGATGATCACAGAGCTGGGAAGATTGTTGTTGAATTGAACGGTAGGTTGAATAAATGTGGGGTTATTAGTCCCGTTTTGACGTTGGTGTCAAAGAGATTGAAGGTTGGACGGCTAGGCACCCCTTCCAGACAGATTAGTTACAACTCCTCAAGATTACGTCATCATCAAACTTCTGCAACAACTCCTCCATGA 264 0.4167 MNRLITFASWKTEIVGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPVLTLVSKRLKVGRLGTPSRQISYNSSRLRHHQTSATTPP 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01626 87 PANTHER 40S RIBOSOMAL PROTEIN S15A 16 71 IPR000630 GO:0003735|GO:0005840|GO:0006412
Trre3g01626 87 SUPERFAMILY Ribosomal protein S8 16 55 IPR035987 GO:0003735|GO:0005840|GO:0006412
Trre3g01626 87 Gene3D - 12 40 - -
Trre3g01626 87 MobiDBLite consensus disorder prediction 68 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01626 Trre-Chr3 12951561 12952907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01626 16 71 Cytoplasmic Ribosomal Protein Gene Family AT5G59850 68.966 6.77e-21 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01626 K02957 - sind:105158239 80.1073