Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01616 ATGATGGAACAAAACTTAATGGGGCAACTTGTTGGTTCTGAGATACATGGGTTCCATACTTTGAGAGACTTGGATGTTGGCGAAACGCTGGAGGAAGCAAAAAGCAGATGGCTTCGTCCGAATGAGATTCAGGCCATACTCAGCAATTATAAATATTTTACTATCCATGTCAAGCCATTGCATTTGCCCAAAAGTGGTACTGTTGTACTATTTGACCGCAAAATGCTTAGGAACTTTCGAAAAGATGGGCACAACTGGAAAAAGAAAAATGACGGGAAAACTGTTAAAGAAGCGCATGAACATTTAAAAGTTGGCAATGTAGAGAGGATCCACGTATATTATGCACACGGCCAAGATAACCCAAGCTTTGTTCGAAGATGTTATTGGTTGCTTGATAAGAGTCTGGAGCACATAGTCCTTGTTCATTATCGTGATACACAACAAGAGTCTCAAAGTTCTCCTGTTACAGTAAATTCAAATTCGAGTTCTACTTCTGATCCAACTACACCGTGGATTCTATCAGAAGACATAGATTCTGGAACCAACAATGCCTATACTAATGGGCTCAATGGGAATTCGACAGTCAAAAGTCATGAACAGAAGCTTCATGAGCTTAATACACTTGATTGGGATGAATTGGTGGCTTCTAATGCTAATACCCCTACTATACCTAATGGAGGCAATGAACCGCCTTTCTATCAACTAAATCAAAGCTTACTAAATGGAAGCTTTGGCAATGTTGCTGGTAATTCTTCTGCAGAAATTCCTTCGTATAGCAATCCAACTCCGCCTGAGTCTGGAATTAGCCATGTTTCTTACAGTTTTCCAGAAAGTGCTAACCTTCAGAAGAATCATCCTACCAATTTTGGCGGTGTTGATTCCATGGAGGGGACTTTAGTCAATGAAGGTTTGCAAAATCAGAACAGCTTTGGAACGTGGATGAACAATGTCATAACTGATACACCATATTCTGTAGAGGCGTCGGCTCTTGAATCATCAATTCCTTCATCTGTTCATGATACATTTTCATCCCTGCCGATGGATAATAATCAGCAATCTTCTCTGCCAGAACAAGTATTTCATCTCACTGAGGTGGCTCCTGCATGGGCTTCTTCCACTGAGAAAACAAAGATCCTGATAACTGGATATTTTCACAATGATTATCAACACCTTGCAAAGTCCAATCTAGTGTGCATCTGCGGCGAAGCAAGTGTTCCTGTAGAAATTGTTCAGGTTGGAGTTTACCGATGCTGGGTATCACCGCATTCTCCTGGATTCGTAAATCTCTATTTGAGCTTCGATGGCCATAAACCTATCAGCCAAGTTGTTAATTTTGAGTATCGTACTCCTATTTTGCACGATCCTGCTGCTTCAATGGAAGAGACATACAACTGGATTGAGTTTCGACTTCAGACGAGGCTTTCTGATTTGCTTTTTACAACACCAAAGACCATTGATGTTTTCTCTAGTAAAGTATCACCTACTTCACTGAAAGAGACTAAAAAGTTTGCCTCCAAAACATTATTTATTTCCAAAAGTTTGAAACACTTTATGAAGTCGTCTGATGCAAACGCCATTCCATATCCGCATGCGAAAAATACCTTGTTCGAAATTGCATTGAAAAACAAACTAAGGGAATGGCTTTTGGAACGAATTGTCTTAGGATGCAAGATTACCGAGTATGATGCTCAAGGCCAGGGTGTAATTCATTTGTGTACACTTTTGGGATATACTTGGGCTATTAATATGTTTTCCTGGGCAGGCCTGTCGCTTGATTTCCGTGACAAATTTGGATGGACAGCTCTTCACTGGGCAGCATATAATGGAATGGAGAAAATGGTTGCAACTCTGCTATCTTGTGGGGCAAAGCCGAATTTAGTTACAGATCCAACTCCACAAAATCCTGGTGGCTGTACTGCTGCTGATCTTGCTTATATGAAGGGATATGATGGTTTAGCTGCTTATCTTTCTGAAAAGTGTCTGGTTGAGCAGTTCAATGATATGAGCTTAGCTGGAAATATCAGTGGTTCACTCGATACCACCACAAATGATCCAGTAAATCCTGAGAACCTTACTGAGGACCAGATGCAACTAAAGGATACATTGGCAGCTTACCGAACAACAGCTGAGGCAGCAGCACGCATACAAGCTGCGTTTAGAGAGCACTCGCTGAAATTGCGATATCAGTCGGTTCAATTTATTAGCCCAGAGGAGGAAGCACGCCAAATAGTAGCAGCAATGAAGATTCAACATGCCTTTCGCAACTTTGAGACAAGAAAAGCGATGGCAGCCGCTGCTCGGATCCAGTATAAATTCCGTTCGTGGAAGCTGCGTAGAGAGTTTCTCAACATGAGACGTCAGGCTATTAAAATTCAAGCTGCATTTAGGGGATTTCAAATGCGTAGGGATTACCGTAAGATTCTATGGTCAGTTGGAATTCTTGAGAAAGTAATCCTGCGTTGGCGTTTAAAGAGAAAAGGTTTTCGCGGGCTTGAGGTGAATCCCGACGAAGAGATGAAAGAGGAGAAGCAGGAAAGTGATGTAGAGGAGGACTTCTTTAAGACCGGTAGGAAACAAGCAGAAGAACGCGTTGAGAGATCTGTGATACGCGTACAAGCCATGTTTCGTTCTAAGAAAGCGCAACAAGAGTATAGCAGGATGAAGATGGCACATAGTCAAGCAAAGTTGGAACTTGAATTAGAAGAACTTATCAATACTGATGTGGACATGTTAACACCAAAGACATCATAG 2751 0.4155 MMEQNLMGQLVGSEIHGFHTLRDLDVGETLEEAKSRWLRPNEIQAILSNYKYFTIHVKPLHLPKSGTVVLFDRKMLRNFRKDGHNWKKKNDGKTVKEAHEHLKVGNVERIHVYYAHGQDNPSFVRRCYWLLDKSLEHIVLVHYRDTQQESQSSPVTVNSNSSSTSDPTTPWILSEDIDSGTNNAYTNGLNGNSTVKSHEQKLHELNTLDWDELVASNANTPTIPNGGNEPPFYQLNQSLLNGSFGNVAGNSSAEIPSYSNPTPPESGISHVSYSFPESANLQKNHPTNFGGVDSMEGTLVNEGLQNQNSFGTWMNNVITDTPYSVEASALESSIPSSVHDTFSSLPMDNNQQSSLPEQVFHLTEVAPAWASSTEKTKILITGYFHNDYQHLAKSNLVCICGEASVPVEIVQVGVYRCWVSPHSPGFVNLYLSFDGHKPISQVVNFEYRTPILHDPAASMEETYNWIEFRLQTRLSDLLFTTPKTIDVFSSKVSPTSLKETKKFASKTLFISKSLKHFMKSSDANAIPYPHAKNTLFEIALKNKLREWLLERIVLGCKITEYDAQGQGVIHLCTLLGYTWAINMFSWAGLSLDFRDKFGWTALHWAAYNGMEKMVATLLSCGAKPNLVTDPTPQNPGGCTAADLAYMKGYDGLAAYLSEKCLVEQFNDMSLAGNISGSLDTTTNDPVNPENLTEDQMQLKDTLAAYRTTAEAAARIQAAFREHSLKLRYQSVQFISPEEEARQIVAAMKIQHAFRNFETRKAMAAAARIQYKFRSWKLRREFLNMRRQAIKIQAAFRGFQMRRDYRKILWSVGILEKVILRWRLKRKGFRGLEVNPDEEMKEEKQESDVEEDFFKTGRKQAEERVERSVIRVQAMFRSKKAQQEYSRMKMAHSQAKLELELEELINTDVDMLTPKTS 916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01616 916 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 25 893 - -
Trre3g01616 916 Gene3D - 529 665 IPR036770 -
Trre3g01616 916 FunFam calmodulin-binding transcription activator 5 527 667 - -
Trre3g01616 916 Gene3D Immunoglobulins 356 451 IPR013783 -
Trre3g01616 916 SMART CG_1_2 29 147 IPR005559 GO:0003677
Trre3g01616 916 Pfam IQ calmodulin-binding motif 786 805 IPR000048 GO:0005515
Trre3g01616 916 Pfam Ankyrin repeats (3 copies) 539 626 IPR002110 GO:0005515
Trre3g01616 916 SMART iq_5 707 729 IPR000048 GO:0005515
Trre3g01616 916 SMART iq_5 863 885 IPR000048 GO:0005515
Trre3g01616 916 SMART iq_5 741 763 IPR000048 GO:0005515
Trre3g01616 916 SMART iq_5 783 805 IPR000048 GO:0005515
Trre3g01616 916 ProSiteProfiles IQ motif profile. 761 790 IPR000048 GO:0005515
Trre3g01616 916 ProSiteProfiles IQ motif profile. 865 893 IPR000048 GO:0005515
Trre3g01616 916 FunFam Calmodulin-binding transcription activator 5 356 452 - -
Trre3g01616 916 ProSiteProfiles IQ motif profile. 784 808 IPR000048 GO:0005515
Trre3g01616 916 SUPERFAMILY E set domains 362 448 IPR014756 -
Trre3g01616 916 SUPERFAMILY Ankyrin repeat 532 660 IPR036770 -
Trre3g01616 916 ProSiteProfiles Ankyrin repeat region circular profile. 597 625 - -
Trre3g01616 916 Gene3D - 761 808 - -
Trre3g01616 916 ProSiteProfiles CG-1 DNA-binding domain profile. 26 152 IPR005559 GO:0003677
Trre3g01616 916 Pfam CG-1 domain 32 145 IPR005559 GO:0003677
Trre3g01616 916 ProSiteProfiles IQ motif profile. 708 737 IPR000048 GO:0005515
Trre3g01616 916 SMART ANK_2a 597 626 IPR002110 GO:0005515
Trre3g01616 916 SMART ANK_2a 636 667 IPR002110 GO:0005515
Trre3g01616 916 MobiDBLite consensus disorder prediction 149 174 - -
Trre3g01616 916 ProSiteProfiles Ankyrin repeat profile. 597 629 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01616 Trre-Chr3 12849444 12856275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01616 30 897 CAMTA Transcription Factor Family AT3G16940 54.618 0.0 928
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Trre3g01616 Ank_2 1.2e-06 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01616 K21596 - gmx:100819198 1366.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g01616 3 12849444 12856275 Trre3g01616 3 12849444 12856275 ECH
Trre15g04898 15 59105824 59114661 Trre3g01616 3 12849444 12856275 PCT