Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01613 ATGTTTGTTTTTGCATCTTTCATTTGCAGTGATATTCCACAAACATTACAACTCTCAAAGATCAAAACTTTCTCTTCAATTCAACCACCCCACTTTTTCCATTCCACTTCTATAAGATTTTGCATCAGGACTCAAGTTCCTTTCGCTACAAAGGTCTTCTTTTGTCAGGCAAAATCTGGCACAAATGAGTCATTAAACGTAAAAGGGTTCCCTCCAACCTTATTAGCGGCCGAAAAAGAAGAAGCGAAGGCAGTATTAACCTTGTTTTTGAAGAAACAAGGTTTGAGCAATGCAAATGCAGCAAGAATCATCAATAAGTCAGATCCTTTTATCGACCATCTTCTCTCGAAGCTTCACTCTAAACACAAAACTTGGTACCTTTCAGGTAGAGAGCTTACAACTCTTGAGATTAGGGATGCTCTTATCTCTTATCTTGAATCGCTGTTCGAGGAGCATGGAAATGTTCTAGTCGATGTAGTGGAAAACTATCCAAACCCTCCAGTTAAGGATAAATCAGCCGTGCCGATTACCCCTCCTACTCCTAGTGCTGTGGTAGACTCGAAGAAGCTTAAAGCTGTGTCTACGGTGAGTGGTATAGACCCTGCTGCAGGCAATCTTCGCCCTCATATTGTTTATCTTATGGAACTTGGAATGGATAGTGATCAGATTAGGATTATTATGCGACGATTCCCGGCTTTTGCCTACTATAGTTTAGAGGGTAAAATTAAGCCATTGGTTGAGTTTTTTCTTGAACTTGGAGTGCCGAAAGAACAAATTCCTATTATCCTCACTAAAAGGCCTCAATTATGTGGAATCAGTCTATCTGAAAATCTTAAGCCCACCATGAAATTCTTCGAATCTTTGGGCGTCGACAAGAAACAATGGGCGAAGGTGATATACCGCTTCCCGGCCTTGCTAACTTATAGCAGGCAGAAGATTAATGAAAGTGTAGATTTTCTCCGTGAATTAGGTATCTCAGACGAGAACATAGGTAAGATTTTAACTCGTTACCCTAATATAGTTAGTTACAGTGTAGAGGACAATCTCCGGCCGACAGCAACGTACTTCCGTTCTTTAGGGGTTGATGTCGGCGCTTTTTTGTTCAGGTGTCCGCAAACTTTTGGTCTTAGCATTGAGGCGAACATAAAGCCTGTAACCGAATTTTTCTTGGAAAGGGGATATACTGTGGAAGAAATTGGGACTATGATTACGCGATATGGAATGTTGTACACTTTCAGCTTGACTGAGAATATGATACCGAAATGGGATTATTTTATGACTATGGATTATCCGAAATCCGAGCTGGTTAAATTCCCTCAATATTTTGGATACAGTTTAGAACAAAGGATTAAACCGAGATACGCACGCGTGAAAGAAGCCGGGGTGAGATTACTGTTGAATCAAGTTCTTTCACTGTCAAGCAGCAACTTTGAAGAGGTCTTAAAAAAGAAAATCAAGAAATTGCAAGTTGGTTAG 1476 0.4031 MFVFASFICSDIPQTLQLSKIKTFSSIQPPHFFHSTSIRFCIRTQVPFATKVFFCQAKSGTNESLNVKGFPPTLLAAEKEEAKAVLTLFLKKQGLSNANAARIINKSDPFIDHLLSKLHSKHKTWYLSGRELTTLEIRDALISYLESLFEEHGNVLVDVVENYPNPPVKDKSAVPITPPTPSAVVDSKKLKAVSTVSGIDPAAGNLRPHIVYLMELGMDSDQIRIIMRRFPAFAYYSLEGKIKPLVEFFLELGVPKEQIPIILTKRPQLCGISLSENLKPTMKFFESLGVDKKQWAKVIYRFPALLTYSRQKINESVDFLRELGISDENIGKILTRYPNIVSYSVEDNLRPTATYFRSLGVDVGAFLFRCPQTFGLSIEANIKPVTEFFLERGYTVEEIGTMITRYGMLYTFSLTENMIPKWDYFMTMDYPKSELVKFPQYFGYSLEQRIKPRYARVKEAGVRLLLNQVLSLSSSNFEEVLKKKIKKLQVG 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01613 491 Gene3D Transcription termination factor 3, mitochondrial 263 487 IPR038538 -
Trre3g01613 491 SMART mt_12 187 219 IPR003690 GO:0003690|GO:0006355
Trre3g01613 491 SMART mt_12 364 395 IPR003690 GO:0003690|GO:0006355
Trre3g01613 491 SMART mt_12 331 362 IPR003690 GO:0003690|GO:0006355
Trre3g01613 491 SMART mt_12 432 463 IPR003690 GO:0003690|GO:0006355
Trre3g01613 491 SMART mt_12 296 326 IPR003690 GO:0003690|GO:0006355
Trre3g01613 491 SMART mt_12 400 431 IPR003690 GO:0003690|GO:0006355
Trre3g01613 491 SMART mt_12 224 255 IPR003690 GO:0003690|GO:0006355
Trre3g01613 491 SMART mt_12 260 291 IPR003690 GO:0003690|GO:0006355
Trre3g01613 491 PANTHER CGI-12 PROTEIN-RELATED 171 482 IPR003690 GO:0003690|GO:0006355
Trre3g01613 491 FunFam Transcription termination factor MTERF5 chloroplastic 267 487 - -
Trre3g01613 491 Pfam mTERF 209 391 IPR003690 GO:0003690|GO:0006355
Trre3g01613 491 Pfam mTERF 68 320 IPR003690 GO:0003690|GO:0006355
Trre3g01613 491 Pfam mTERF 309 478 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01613 Trre-Chr3 12834378 12837288 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre3g01613 mTERF 2.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01613 K15032 - gmx:100781900 722.235