Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01611 ATGTTTGTTTTTGCATCTTTCATTTGCAGTGATATTCCACAAACAATACAACTCTCAAAACCCACAAAGATCAAAACTTTCTCTTCAATTCAACCACCCCACTTTTTCCATCCCACTTCTATAAGAACTCAAGTTCCTTTCGCTACAAAGGTCTTCTTTTGTCAGGCAAAATCTGTCACAAATGAGTCATTAAACGTAAAAGGGTTCCCTCCAACCTTATTAGCGTCCGAAAAAGAAGAAGCGAAGGCAGTATTAACCTTGTTTTTGAAGAAACAAGGTTTGAGCAATGCAAATGCAGCAAGAATCATCAATAAGTCGGATCCTTTTATTGATCACCTTCTCTCGAAGCTTCACTCTAAACACAAAACTTGGTACCTTTCAGGTAGAGAGCTTACAACTCTTGAGATTAGGGATGCTCTTATCTCTTATCTTGAATCGCTTTTCGAGGAGCATGGAAATGTTCTAATCGATGTAGTGGAAAACTATCCGAACCCTCCAGTTAAGGATAAATCATCCGCGCCGATTATCCCTCCTAATCCTAGTGCTGTGGTAGACTCGAAGAAGCTTAAAGCTGTGTCTACGGTGAGTGGTATAGACCCTGCTGCGGGAAATCTTCGCCCTCATATTGTTTATCTTATGGAACTTGGAATGGATAGTGATCAGATTAGGATTATTATGCGACGATTCCCGGCTTTTGCCTACTATAGTTTAGAGGGTAAAATTAAGCCATTGGTTGAGTTTTTTCTTGAACTTGGAGTGCCGAAAGAACAAATTCCTATTATCCTCACTAAAAGGCCTCAATTATGTGGAATCAGTCTATCTGAAAATCTTAAGCCCACCATGAAATTCTTCGAATCTTTGGGCGTCGACAAGAAACAATGGGCGAAAGTGATATACCGCTTCCCGGCCTTGCTAACTTATAGCAGGCAGAAGATTAATGAAAGTGTAGATTTTCTCCATGAATTAGGTATCTCAGACGAGAGCATAGGTAAGATTTTAACTCGTTACCCTAATATAATTAGTTACAGTGTAGAGGACAATCTCCGACCGACAGCAACGTACTTCCATTCTTTAGGGGTTGATGTCGGCGCTTTTTTGTTCAGGTGTCCGCAAACTTTTGGTCTTAGCATTGAGGCGAATATAAAGCCGGTAACCGAATTTTTCTTGGAAAGGGGATATACTGTGGAAGAAATAGGGACTATGATTACGCGATATGGAATGTTGTATACTTTCAGCTTGACTGAGAATATGATACCGAAATGGGATTATTTTATGACTATGGATTATCCGAAATCCGAGCTGGTTAAATTCCCTCAATATTTTGGATATAGTTTAGAACAAAGGATTAAACCGAGATATGCACGCGTGAAAGAAGCCGGGGTGAGATTACTGTTGAATCAAGTTCTCTCACTGTCAAGCAGCAACTTTGAAGAGGTCTTAAAAAAGAAAATAAAGAAATTGCAAGTTGGTTAG 1473 0.3958 MFVFASFICSDIPQTIQLSKPTKIKTFSSIQPPHFFHPTSIRTQVPFATKVFFCQAKSVTNESLNVKGFPPTLLASEKEEAKAVLTLFLKKQGLSNANAARIINKSDPFIDHLLSKLHSKHKTWYLSGRELTTLEIRDALISYLESLFEEHGNVLIDVVENYPNPPVKDKSSAPIIPPNPSAVVDSKKLKAVSTVSGIDPAAGNLRPHIVYLMELGMDSDQIRIIMRRFPAFAYYSLEGKIKPLVEFFLELGVPKEQIPIILTKRPQLCGISLSENLKPTMKFFESLGVDKKQWAKVIYRFPALLTYSRQKINESVDFLHELGISDESIGKILTRYPNIISYSVEDNLRPTATYFHSLGVDVGAFLFRCPQTFGLSIEANIKPVTEFFLERGYTVEEIGTMITRYGMLYTFSLTENMIPKWDYFMTMDYPKSELVKFPQYFGYSLEQRIKPRYARVKEAGVRLLLNQVLSLSSSNFEEVLKKKIKKLQVG 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01611 490 PANTHER CGI-12 PROTEIN-RELATED 172 481 IPR003690 GO:0003690|GO:0006355
Trre3g01611 490 Gene3D Transcription termination factor 3, mitochondrial 266 486 IPR038538 -
Trre3g01611 490 FunFam Transcription termination factor MTERF5 chloroplastic 266 486 - -
Trre3g01611 490 Pfam mTERF 66 320 IPR003690 GO:0003690|GO:0006355
Trre3g01611 490 Pfam mTERF 308 477 IPR003690 GO:0003690|GO:0006355
Trre3g01611 490 SMART mt_12 186 218 IPR003690 GO:0003690|GO:0006355
Trre3g01611 490 SMART mt_12 431 462 IPR003690 GO:0003690|GO:0006355
Trre3g01611 490 SMART mt_12 295 325 IPR003690 GO:0003690|GO:0006355
Trre3g01611 490 SMART mt_12 399 430 IPR003690 GO:0003690|GO:0006355
Trre3g01611 490 SMART mt_12 259 290 IPR003690 GO:0003690|GO:0006355
Trre3g01611 490 SMART mt_12 363 394 IPR003690 GO:0003690|GO:0006355
Trre3g01611 490 SMART mt_12 330 361 IPR003690 GO:0003690|GO:0006355
Trre3g01611 490 SMART mt_12 223 254 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01611 Trre-Chr3 12808435 12811885 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre3g01611 mTERF 1.4e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01611 K15032 - gmx:100781900 719.539