Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01610 ATGAAAACTTTCTCTTCAATTCAACCACCCCACAGTTTCCATTTCAAACCATTTTTCTCTTCCACTTCCATAAGGACTCGAGTTCCTTTCTCTGCAAGGATCTTCTTTTGTCATGCAAAATCTGGCACAAATGAGTCATTAAACATACAAGTTTTGCCTCCAATGCTATTAGCAGACCCTCATATTGTTTATCTTATGGAACATGGAATGAATATTGATCAGATTAGGACTATTATGCGACGATTCCCGGCTTTCGCCCGCTATAGTTTGGAGGGTAAAATTAAGCCATTCGTTGAGTTTTTTCTTGAACTTGGAGTGCCGAAAGAACAAATTCCTATTATCATTATTAAAAGGCCTCAATTATGTGGACTCAGTCTATCTAAAAATATTAAGCCGACCGTGAAATTCCTCGAATCTTTGGGCGCAGACAAGAAACAGTGGGCGAAGGCGATCTACCGTTTCCCGACTTTGTTAACTTATAGCAGGCACAAGATTAATGAAAATGTAGATTTTCTCCATGAATTAGGAATCTCAGACGAGATCATATGTAGGATTTTAATTCGTTTCCCTAATATGGTTAGTTGCAGTGTAGAGGACAATCTCCGACCGACAGCAAAGTACTTCCGTTCATTAGGGGCTGATGTTGGCGCTCTTCTGTTCAGGTGTCCGCAAATTATTGGTCTTAGCATTGAGGCGAATATAAAGCCGGTAACAGAATTTTTCTTGGAAAGGGGATATACTTTGGAAGAAATTGGGACTATGATTTCGAGTTGTGCAAAGTTGTACACTTACAGCTTGACTGAGACTATTACGCCAAAATTGGATTTTTTTATGACTACGGATTACCCAAAATCCGAGCTGGTTAAATTCCCTCAATATTTTGGATACAGTTTAGAACAAAGGATTAAACCGAGATATGCACGCATGAAAGGTTCTGGAGTGAGATTAGTGTTGAATCAGCTTCTTACAGTGTCAAACAGAAACTTTGAAGAGGTCTTGTTAAAAAAGAAAATAAAGAAATTGCAAGTTGATTAG 1035 0.3845 MKTFSSIQPPHSFHFKPFFSSTSIRTRVPFSARIFFCHAKSGTNESLNIQVLPPMLLADPHIVYLMEHGMNIDQIRTIMRRFPAFARYSLEGKIKPFVEFFLELGVPKEQIPIIIIKRPQLCGLSLSKNIKPTVKFLESLGADKKQWAKAIYRFPTLLTYSRHKINENVDFLHELGISDEIICRILIRFPNMVSCSVEDNLRPTAKYFRSLGADVGALLFRCPQIIGLSIEANIKPVTEFFLERGYTLEEIGTMISSCAKLYTYSLTETITPKLDFFMTTDYPKSELVKFPQYFGYSLEQRIKPRYARMKGSGVRLVLNQLLTVSNRNFEEVLLKKKIKKLQVD 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01610 344 Gene3D Transcription termination factor 3, mitochondrial 118 343 IPR038538 -
Trre3g01610 344 PANTHER CGI-12 PROTEIN-RELATED 58 335 IPR003690 GO:0003690|GO:0006355
Trre3g01610 344 SMART mt_12 148 178 IPR003690 GO:0003690|GO:0006355
Trre3g01610 344 SMART mt_12 284 315 IPR003690 GO:0003690|GO:0006355
Trre3g01610 344 SMART mt_12 252 283 IPR003690 GO:0003690|GO:0006355
Trre3g01610 344 SMART mt_12 76 107 IPR003690 GO:0003690|GO:0006355
Trre3g01610 344 SMART mt_12 112 143 IPR003690 GO:0003690|GO:0006355
Trre3g01610 344 SMART mt_12 216 247 IPR003690 GO:0003690|GO:0006355
Trre3g01610 344 SMART mt_12 183 214 IPR003690 GO:0003690|GO:0006355
Trre3g01610 344 Pfam mTERF 64 243 IPR003690 GO:0003690|GO:0006355
Trre3g01610 344 Pfam mTERF 215 330 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01610 Trre-Chr3 12804573 12806892 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre3g01610 mTERF 3.7e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01610 K15032 - gmx:100781900 412.92