Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01576 ATGGCTTCAACCAGTAAAACACCACCAAAAGATACAAATTCAAATGCAAATGCAAATGCAACCACAAAAGACGAAAACAACAATAACAAACTCAAACCATCATCAATGAAAAAAGCCATAGCACAATACACCGAAGATGCAAGACTCCACGCTGTTTTTGAACAATCTGGAGATTCTTTCGATTATTCTCAATCAATTCGTGTAACCGCCACCGCAACTGAATCTGTTCCTGAACAACAAATAACCGCTTATTTAGCACGAATTCAACGTGGCGGTTTTATTCAACCTTTTGGTTCAATGATCGCAGTTGATGAACCTTCTTTTCGTGTTCTTGCTTATTCTGAAAACGCACGTGATATGCTTGGTATTGCTCCTCAATCAGTACCTTCTTTAGAAGATGAAGATTCTTTTACTACTTCTAGTTTTTGTTTAGGTATTGATGTTCGTTCACTTTTTACTAATTCGAGTTCGATTTTGCTTGAGAAAGCTTTTTCTGCTCGTGAAATTAGTTTGATGAATCCTATTTGGATTCATTCTAGATCTACAGGTAAACCTTATTATGGAATTCTTCATCGGATTGATGTTGGTGTTGTTATTGATTTGGAACCTGCCAGATCTGAGGATCCAGCACTTTCTATTGCTGGTGCTGTTCAGTCTCAGAAACTTGCTGTGAGAGCGATTTCGCAGCTTCAGTCGCTTCCTGGTGGTGATGTTAAGGTTTTGTGTGATACTGTTGTTGAGAGTGTTAGAGAATTGACCGGTTACGATAGAGTTATGGTTTATAAGTTTCATGAGGATGAACATGGAGAAGTTGTTGCTGAGAGTAAGAGGATTGATTTGGAGCCGTATATTGGTTTGCATTATCCTGCTACTGATATACCTCAGGCTTCGAGGTTTTTGTTTAAGCAGAATAGGGTTAGGATGATTGTGGATTGTAATGCTACTCCTGTTAGGGTTTTTCAGGATGAGGCGCTTGTTCAGCCTGTTTGTTTGGTTGGGAGTACTCTTCGTGCTCCTCACGGTTGTCATGCTCAGTATATGGCTAATATGGGTTCTATTGCTTCTTTGGCTATGGCTGTTATTATTAATGGGAATGATGAAGATGGTAATGGGATTGCTGGTACTGGAAGAAGTTCGATGAAGCTTTGGGGTCTTGTTGTTTGTCATCATACTTCGGCTAGGTGTATTCCTTTTCCTCTTAGGTATGCTTGTGAGTTTCTAATGCAGGCTTTTGGACTTCAATTGAATATGGAGCTTCAGTTAGCCGTGCAGTCGTTGGAGAAGCGGGTTTTGAGGACGCAGACTTTGTTGTGTGATATGTTACTTAGGGATTCTCCTACTGGGATTGTTACTCAGAGTCCTAGTATTATGGACTTGGTTAGGTGTGATGGGGCTGCTTTGTATTATCAGGGAAATTACTATCCGTTGGGTGTTACTCCGACGGAGTCTCAGATAAGGGATATTATAGAGTGGCTGTTGGCCTTCCATGGTGATTCGACGGGTTTGAGTACTGATAGTTTGGCTGATGCTGGCTATCCTGGGGCTGCTTCTCTTGGAGATGCAGTTTGTGGGATGGCTGTTGCGTATATCACTGAAAAGGATTTTCTTTTCTGGTTCAGATCTCATACGGCAAAAGAGATTAAATGGGGTGGTGCGAAACATCACCCGGAGGATAAAGATGATGGGCAGAGAATGCATCCTCGTTCTTCCTTCAAGGCCTTTTTAGAAGTAGTGAAGAGCCGTAGTATGCAGTGGGAGAATGCAGAAATGGATGCAATTCACTCCTTGCAGCTTATCCTACGAGACTCATTTAAGGAAGCCGAGAATAACGATTCAAAGGCTGTTGTGCATACACATATGGCAGAACTAGAGTTGCAGGGTGTGGATGAACTGAGTTCTGTGGCTAGAGAAATGGTTAGGTTGATAGAAACTGCCACTGCTCCCATATTTGCTGTTGATGTCGAAGGCCGTATCAATGGGTGGAATGCCAAGGTTTCTGAATTGACGGGACTTCTGGTAGAGGAGGCCATGGGCAAGTCTTTGGTTCATGATCTTGTGTATAAGGAGTCTCAAGAAATTGTTGACAAGCTTCTTTCTCATGCTTTAAAAGGTGAAGAAGATAAGAATGTTGAAATAAAAATGAGGACGTTTGGCCCAGGGAATCAAAATAAGGCAGTTTTTATAGTGGTGAATGCTTGCTCCAGCAAGGATTATACGAATAATATTGTTGGAGTGTGCTTTGTTGGTCAGGATGTTACCGGTCAAAAAGTTGTAATGGATAAATTCATTAACATACAAGGTGACTACAAGGCTATTGTACATAGTCCAAATGCGTTGATCCCTCCCATTTTTGCATCAGATGATAACACATGTTGCTTAGAGTGGAACAATGCTATGGAAAAGCTCAGTGGTTGGAGCCGTGCAGAAGTTATTGGCAAATTGTTGGTGGGAGAGGTTTTTGGTAGTTTGTGTCAGTTAAAGGGTTCGGATTCTATGACAAAATTCATGATTGTCTTGCACAACGCACTTGGTGGACAAGACACGGACAAATTCCCATTTTCATTTCTTGACCGGCATGGAAAGTATGTGCAGACTTTCTTGACGGCAAATAAAAGGGTTAACATCGATGGACAGATCATTAGCGCTTTTTGCTTTTTACAAATTGTGAGCCCTGAACTTCAACAGGCTCTGACAGTCCAGAGACAACAGGATACTAGTAGCTTTGCTAGGATGAAAGAGTTAGCTTATATTTGTCAAGAAGTAAAAAATCCATTGAGTGGCATACGTTTTACAAACTCTCTTTTGGAGTCTACATGTCTGACTGATGAGCAAAAGCAGTTACTTGAGACTAGTGCTGCTTGCGAGAAGCAAATGTTAAAGATAATACGGGACATTGATCTGGAAAGCATCGAGGATGGGTCCCTGGAGCTTGACAAGCGGGAATTCTTGCTTGAGAATGTCATAAATGCAGTTGTTAGCCAAGTAATGTTATTGTTAAGAGAAAGAAATTTGCAGTTGATTCGTGATATTCCTGAAGAAATCAAGACATTGGCTGTCTATGGTGATCAATTGAGGATTCAACAAGTCTTGGCCGATTTCTTAATGAATGTGGTGCGCTATGCACCGTCTCCAGATGGTTGGGTAGAGATTCATGTGTTTCCAAGAATAAAACAAATTTCAGATGGGCTCACTATTCTGCATGCTGAATTTAGGATGGTTTGTCCTGGGGAAGGTCTTCCGCCTGAATTGATTCATGACATGTTCCATAACAGTCGGTGGGTGACTCAAGAAGGCTTAGGGCTAAGCATTAGCAGGAAGATAATAAAATCGATGAATGGTGAAGTTCAATATGTCAGGGAGGCGGAACGGTGCTACTTTTTGGTTCTTCTTGAACTACCTGTGACGCGGAGAAGCTCTAAAAATGTTAATTAG 3432 0.4138 MASTSKTPPKDTNSNANANATTKDENNNNKLKPSSMKKAIAQYTEDARLHAVFEQSGDSFDYSQSIRVTATATESVPEQQITAYLARIQRGGFIQPFGSMIAVDEPSFRVLAYSENARDMLGIAPQSVPSLEDEDSFTTSSFCLGIDVRSLFTNSSSILLEKAFSAREISLMNPIWIHSRSTGKPYYGILHRIDVGVVIDLEPARSEDPALSIAGAVQSQKLAVRAISQLQSLPGGDVKVLCDTVVESVRELTGYDRVMVYKFHEDEHGEVVAESKRIDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCNATPVRVFQDEALVQPVCLVGSTLRAPHGCHAQYMANMGSIASLAMAVIINGNDEDGNGIAGTGRSSMKLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLAVQSLEKRVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVRCDGAALYYQGNYYPLGVTPTESQIRDIIEWLLAFHGDSTGLSTDSLADAGYPGAASLGDAVCGMAVAYITEKDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSMQWENAEMDAIHSLQLILRDSFKEAENNDSKAVVHTHMAELELQGVDELSSVAREMVRLIETATAPIFAVDVEGRINGWNAKVSELTGLLVEEAMGKSLVHDLVYKESQEIVDKLLSHALKGEEDKNVEIKMRTFGPGNQNKAVFIVVNACSSKDYTNNIVGVCFVGQDVTGQKVVMDKFINIQGDYKAIVHSPNALIPPIFASDDNTCCLEWNNAMEKLSGWSRAEVIGKLLVGEVFGSLCQLKGSDSMTKFMIVLHNALGGQDTDKFPFSFLDRHGKYVQTFLTANKRVNIDGQIISAFCFLQIVSPELQQALTVQRQQDTSSFARMKELAYICQEVKNPLSGIRFTNSLLESTCLTDEQKQLLETSAACEKQMLKIIRDIDLESIEDGSLELDKREFLLENVINAVVSQVMLLLRERNLQLIRDIPEEIKTLAVYGDQLRIQQVLADFLMNVVRYAPSPDGWVEIHVFPRIKQISDGLTILHAEFRMVCPGEGLPPELIHDMFHNSRWVTQEGLGLSISRKIIKSMNGEVQYVREAERCYFLVLLELPVTRRSSKNVN 1143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01576 1143 SUPERFAMILY PYP-like sensor domain (PAS domain) 88 208 IPR035965 -
Trre3g01576 1143 SUPERFAMILY PYP-like sensor domain (PAS domain) 639 748 IPR035965 -
Trre3g01576 1143 SUPERFAMILY GAF domain-like 217 416 - -
Trre3g01576 1143 NCBIfam PAS domain S-box protein 641 756 IPR000014 -
Trre3g01576 1143 SMART HisKA_10 909 973 IPR003661 GO:0000155|GO:0007165
Trre3g01576 1143 FunFam Phytochrome 630 762 - -
Trre3g01576 1143 Gene3D PAS domain 87 340 - -
Trre3g01576 1143 FunFam Phytochrome 972 1138 - -
Trre3g01576 1143 Pfam GAF domain 237 419 IPR003018 GO:0005515
Trre3g01576 1143 FunFam Phytochrome 424 554 - -
Trre3g01576 1143 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 909 965 IPR036097 GO:0000155|GO:0007165
Trre3g01576 1143 ProSiteProfiles Histidine kinase domain profile. 916 1136 IPR005467 -
Trre3g01576 1143 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 984 1133 IPR036890 -
Trre3g01576 1143 CDD HisKA 909 965 IPR003661 GO:0000155|GO:0007165
Trre3g01576 1143 SMART pas_2 767 837 IPR000014 -
Trre3g01576 1143 SMART pas_2 636 703 IPR000014 -
Trre3g01576 1143 CDD PAS 645 752 IPR000014 -
Trre3g01576 1143 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 237 409 IPR016132 -
Trre3g01576 1143 SMART gaf_1 237 429 IPR003018 GO:0005515
Trre3g01576 1143 Gene3D - 424 597 IPR043150 -
Trre3g01576 1143 SUPERFAMILY PYP-like sensor domain (PAS domain) 782 884 IPR035965 -
Trre3g01576 1143 ProSiteProfiles PAS repeat profile. 768 820 IPR000014 -
Trre3g01576 1143 ProSiteProfiles PAS repeat profile. 634 705 IPR000014 -
Trre3g01576 1143 Pfam Phytochrome region 432 607 IPR013515 GO:0006355|GO:0009584
Trre3g01576 1143 CDD HATPase_Phy-like 1020 1132 IPR044767 -
Trre3g01576 1143 PIRSF Phytochrome_conventional 15 1141 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Trre3g01576 1143 ProSitePatterns Phytochrome chromophore attachment site signature. 337 346 IPR013516 -
Trre3g01576 1143 SMART HKATPase_4 1021 1136 IPR003594 -
Trre3g01576 1143 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1021 1127 IPR003594 -
Trre3g01576 1143 Gene3D PAS domain 629 762 - -
Trre3g01576 1143 Gene3D - 891 972 - -
Trre3g01576 1143 Gene3D PAS domain 781 890 - -
Trre3g01576 1143 Pfam His Kinase A (phospho-acceptor) domain 913 973 IPR003661 GO:0000155|GO:0007165
Trre3g01576 1143 FunFam Phytochrome 890 971 - -
Trre3g01576 1143 PANTHER OS08G0260000 PROTEIN 78 971 - -
Trre3g01576 1143 Pfam PAS fold 83 204 IPR013654 GO:0006355
Trre3g01576 1143 CDD PAS 779 887 IPR000014 -
Trre3g01576 1143 Gene3D - 973 1139 IPR036890 -
Trre3g01576 1143 Pfam PAS fold 768 887 IPR013767 GO:0006355
Trre3g01576 1143 Pfam PAS fold 637 752 IPR013767 GO:0006355
Trre3g01576 1143 SUPERFAMILY GAF domain-like 427 605 - -
Trre3g01576 1143 Gene3D - 218 580 IPR029016 -
Trre3g01576 1143 FunFam Phytochrome 781 889 - -
Trre3g01576 1143 PRINTS Phytochrome signature 152 174 IPR001294 GO:0006355|GO:0009584
Trre3g01576 1143 PRINTS Phytochrome signature 567 585 IPR001294 GO:0006355|GO:0009584
Trre3g01576 1143 PRINTS Phytochrome signature 252 271 IPR001294 GO:0006355|GO:0009584
Trre3g01576 1143 PRINTS Phytochrome signature 656 671 IPR001294 GO:0006355|GO:0009584
Trre3g01576 1143 PRINTS Phytochrome signature 730 747 IPR001294 GO:0006355|GO:0009584
Trre3g01576 1143 PRINTS Phytochrome signature 534 553 IPR001294 GO:0006355|GO:0009584
Trre3g01576 1143 PRINTS Phytochrome signature 637 653 IPR001294 GO:0006355|GO:0009584
Trre3g01576 1143 PRINTS Phytochrome signature 750 770 IPR001294 GO:0006355|GO:0009584
Trre3g01576 1143 PRINTS Phytochrome signature 449 469 IPR001294 GO:0006355|GO:0009584
Trre3g01576 1143 PRINTS Phytochrome signature 337 358 IPR001294 GO:0006355|GO:0009584
Trre3g01576 1143 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01576 Trre-Chr3 12521247 12525659 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01576 14 1134 Histidine Kinase Gene Family AT4G16250 73.386 0.0 1751
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01576 K12121 - gmx:100799831 1969.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g01576 3 12521247 12525659 Trre3g01576 3 12521247 12525659 ECH