Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01574 ATGGAAACTCCAGAACCAGAAGGTGAACTTCTAAAGAAGATTGAAAAACTTGAAGCTGGTCAAGTTCATCTCAAGCAAGAAATGTCAAAGCTTAAACTTTCTCAACGTAGAAGGTCTCATTCAGTTTCACCACAACGTTCAAGGTTAGGTGCTTCTGCTTCATCATCTTCATCTTCTTCTTCTGTTGCAAATAGATATAACAAAGGCTCTTCTTCACCTCTTCAAAGAGAGAGTCGTAGTAATCATGATCCTCATCATCAAAATGGTGGCAAGTATCTCAATATTTTGCAGTCAATTGGTCATTCTGTTCATATATTGGATCTTCAATGTCGTATTATATACTGGAACCCTAGTGCTGAAAATCTGTATGGTCATACAGCAGAAGAAGTTCTTGGTCATGATGGGATTGAGGTGCTTGTAGAGCCTAGTGAATTTGACTTAGCTAGTGATATAGTCAACCGTGTGAAAATGGGAGAATGTTGGACTGGTCAATTTCCTGTTAAGAATAAGATGGGGGATAGATTTGTAGTTGTTGCAACCAATACTCCTTTCTATGATGATGATGGAAGCTTGATTGGTATTATTTGTGTCTCGAGTGATTCGAGACCTTTCCTTGAAAACATAGTTCCTTTTTCGGTTGGAAAGAATGAAGCAAAGGATTCAGGTGTTAATTTTCCTAGAATTGGGATTACAAATAAGCTTGGTCTTGATCCTCAGCAACCACTTCAAAATGCTCTAGCATCGAAAATCTCGAATTTGGCTACAAAGGTTAGTAACAAAGTCAAGTCTAAAATCCGGACGCGAGAAAATGGTGTTGGTGGAGAAGGAGGGAGCGGAGAAAGTCATCATTCTGAGCACGGTTTCTCGGATTATGGTCATTCTGATCAGAGAGAGGATGGCGGCAATTCCAGTGGAGCTAGCACGCCCGCAGGAGAGGTGCCTCCGACTCCTTTTGGTTCATTTACTCATGCTGAAGAGCGATCCCAAGGGAAAACTATGAGGAACTCTGGCGATGAGAGTGAAGAAAAACCTATACACAAAATCATAACTTCTAAGGCCGAAGCATGGATTCAAAAGAAAACTATGTCATGGCCATGGAAAGCAAATGATCGGGAAGAATCCGAGTCAAAGAACATTCGTGTTTCTTGGCCTTGGTTACAGGGTGATCAAGAAAAAGAGTCAACTAATCACAAGAATCCGTCCTCTGGATTGAAGCCGCCAGAAAGCCGGGCTGTTGAAAGTCATCAACATGTTCAAAATGAGGCTTCAGGAGGATCCTGGTCCTCCTTCAATGTTAACAGCACAAGTAGTACCAGCAGTTGCGGGAGTGGCAGCGGTAGCAGTTCTGCTCCTAATAATAGAGTGGATGTTGATTCTGATTGTTTAGATTACGAAATTTTGTGGGAGGACCTTACAATTGGAGAGAATATTGGACAAGGTTCTTGTGGAACTGTATACCATGCTCTGTGGTATGGATCAGATGTTGCTGTAAAGGTTTTCTCAAAGCAAGAATATTCAGAAGACGTAATACAGTCCTTCAGGCAAGAGGTGTCTCTCATGAAAAGACTTCGCCATCCAAATATTCTACTTTTTATGGGCGCAGTAACTTCACCTCAGCGTCTATGCATTGTAACAGAGTTTCTACCACGCGGAAGCTTATTTCGTTTGCTTCAGAGAAACACATCCAAACCTGATTGGAGACGGAGAGTTCACATGGCTTTAGATATTGCACGAGGTGTAAATTATCTTCATCATTGCAACCCTCCTATCATCCATCGAGATTTGAAAACTTCGAATCTTCTTGTTGATAAGAATTGGACTGTGAAGGTCGGTGATTTTGGTCTTTCACGCATCAAACATGAAACCTATCTCGAGACTAAAACTGGAAAAGGCACGCCTCAATGGATGGCACCAGAAGTTCTTCGTAATGAACCCTCAAATGAGAAGTCCGACGTTTACAGCTTTGGGGTGATTATGTGGGAACTTGCAACTGAAAAAATCCCTTGGGATACTCTCAATGCAATGCAGGTTATTGGAGCTGTAGGGTTTATGAACCACCGGCTAGAAATTCCGGAAGATATTGATCCACAGTGGGCTTCTATAATCGAGAGTTGTTGGCATACTGATCCGGCTAGCCGACCAACATTCCAAGAACTGCTGGAAAGGCTTAAAGAACTTCAGCGACGCTACGCCATTCAGTTCCAAGCAGCCAGATCTGCTGTTGGGGAAAACACTCAAAAGAGTCCTAGCTGA 2253 0.423 METPEPEGELLKKIEKLEAGQVHLKQEMSKLKLSQRRRSHSVSPQRSRLGASASSSSSSSSVANRYNKGSSSPLQRESRSNHDPHHQNGGKYLNILQSIGHSVHILDLQCRIIYWNPSAENLYGHTAEEVLGHDGIEVLVEPSEFDLASDIVNRVKMGECWTGQFPVKNKMGDRFVVVATNTPFYDDDGSLIGIICVSSDSRPFLENIVPFSVGKNEAKDSGVNFPRIGITNKLGLDPQQPLQNALASKISNLATKVSNKVKSKIRTRENGVGGEGGSGESHHSEHGFSDYGHSDQREDGGNSSGASTPAGEVPPTPFGSFTHAEERSQGKTMRNSGDESEEKPIHKIITSKAEAWIQKKTMSWPWKANDREESESKNIRVSWPWLQGDQEKESTNHKNPSSGLKPPESRAVESHQHVQNEASGGSWSSFNVNSTSSTSSCGSGSGSSSAPNNRVDVDSDCLDYEILWEDLTIGENIGQGSCGTVYHALWYGSDVAVKVFSKQEYSEDVIQSFRQEVSLMKRLRHPNILLFMGAVTSPQRLCIVTEFLPRGSLFRLLQRNTSKPDWRRRVHMALDIARGVNYLHHCNPPIIHRDLKTSNLLVDKNWTVKVGDFGLSRIKHETYLETKTGKGTPQWMAPEVLRNEPSNEKSDVYSFGVIMWELATEKIPWDTLNAMQVIGAVGFMNHRLEIPEDIDPQWASIIESCWHTDPASRPTFQELLERLKELQRRYAIQFQAARSAVGENTQKSPS 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01574 750 MobiDBLite consensus disorder prediction 44 77 - -
Trre3g01574 750 FunFam PAS domain-containing protein tyrosine kinase 464 548 - -
Trre3g01574 750 Gene3D Transferase(Phosphotransferase) domain 1 549 749 - -
Trre3g01574 750 Pfam PAS domain 104 200 IPR000014 -
Trre3g01574 750 MobiDBLite consensus disorder prediction 28 89 - -
Trre3g01574 750 MobiDBLite consensus disorder prediction 260 350 - -
Trre3g01574 750 Gene3D Phosphorylase Kinase; domain 1 464 548 - -
Trre3g01574 750 MobiDBLite consensus disorder prediction 327 349 - -
Trre3g01574 750 MobiDBLite consensus disorder prediction 416 431 - -
Trre3g01574 750 CDD STKc_MAP3K-like 477 723 - -
Trre3g01574 750 SUPERFAMILY Protein kinase-like (PK-like) 459 723 IPR011009 -
Trre3g01574 750 SMART pas_2 90 156 IPR000014 -
Trre3g01574 750 MobiDBLite consensus disorder prediction 279 297 - -
Trre3g01574 750 MobiDBLite consensus disorder prediction 367 431 - -
Trre3g01574 750 NCBIfam PAS domain S-box protein 92 200 IPR000014 -
Trre3g01574 750 FunFam PAS domain-containing protein tyrosine kinase family protein 549 740 - -
Trre3g01574 750 Gene3D PAS domain 101 203 - -
Trre3g01574 750 SMART serkin_6 471 731 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g01574 750 CDD PAS 103 200 IPR000014 -
Trre3g01574 750 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 67 731 - -
Trre3g01574 750 Coils Coil 716 736 - -
Trre3g01574 750 ProSiteProfiles Protein kinase domain profile. 471 726 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g01574 750 ProSiteProfiles PAS repeat profile. 88 159 IPR000014 -
Trre3g01574 750 ProSitePatterns Serine/Threonine protein kinases active-site signature. 590 602 IPR008271 GO:0004672|GO:0006468
Trre3g01574 750 Pfam Protein tyrosine and serine/threonine kinase 471 723 IPR001245 GO:0004672|GO:0006468
Trre3g01574 750 PRINTS Tyrosine kinase catalytic domain signature 545 558 IPR001245 GO:0004672|GO:0006468
Trre3g01574 750 PRINTS Tyrosine kinase catalytic domain signature 584 602 IPR001245 GO:0004672|GO:0006468
Trre3g01574 750 PRINTS Tyrosine kinase catalytic domain signature 694 716 IPR001245 GO:0004672|GO:0006468
Trre3g01574 750 PRINTS Tyrosine kinase catalytic domain signature 650 672 IPR001245 GO:0004672|GO:0006468
Trre3g01574 750 PRINTS Tyrosine kinase catalytic domain signature 631 641 IPR001245 GO:0004672|GO:0006468
Trre3g01574 750 SUPERFAMILY PYP-like sensor domain (PAS domain) 94 197 IPR035965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01574 Trre-Chr3 12506258 12511063 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01574 1 745 MAP Kinase Kinase Kinase AT3G06620 57.584 0.0 867
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Trre3g01574 PK_Tyr_Ser-Thr 8.3e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01574 - - gmx:100815858 1025.39