Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01571 ATGTTAACACAAAAGATTGGAACTAATCGCACTATTAAAGTTGATATCAATGGAAATGGAGAATTTAAATCAGTTCAAGCTGCAATTGATTCAATTCCTGAAGGAAATTCTAATTGGGTCATCATTCATATTAGACAAGGAGTATATAGAGAAAAAGTGCACATACCAAATACAAAGCGTTACATATTCTTGAGAGGGAATGGAAGAGGAAGAACTGCCATTGTTTGGTCTGAAAGTTCATCTGACAACATAGCTTCTGCTACCTTCAAAGCTGAAGCTCCTGACTGCATTGTCTTTGGAATTAGCTTCAAGAATGAGGCACCAACAGGGGTTGCATATACTTCACAAAATCAATCAGTGGCAGCATTTGTGGCAGCAGACAAAATAGCATTTTACCATTGTGCATTTTATAGTACACATAACACACTCTTTGATTACAAAGGTAGACATTATTATGAGTCATGTTACATTCAAGGCTCTATTGATTTCATATTTGGTCGTGCCAGATCACATTTCCATACTTGTGAGATATTTGTGGTTGATGATAAAAGGATAACAATTCGTGGGTCAATTACAGCTGCAAGTAGAGAAAATGAAATTGAGATGTGTGGATATATATTTATTAAATGCAAAGTTTATGGCATTGGTGGTGTGTACTTAGGAAGGGCTAAAGGTCCTTATTCAAGGGTCATTTTTGCTAACTCATACCTCTCCAATTCCATTGTCCCTGAAGGATGGACCAATTGGAGTTACGATGGTCCCACAGTACATCTTTATCATGCGGAGTATAAAAACCATGGACCTGGAGCAAGAACAGAAGGAAGAGCTCCTTGGTCAAGGCAGCTTACTGATGAACAAGTTGCTCCATTTTTAGCTATTGATTACATTGATGGAAAGAATTGGTTGCCAGCATATCTATAA 921 0.3735 MLTQKIGTNRTIKVDINGNGEFKSVQAAIDSIPEGNSNWVIIHIRQGVYREKVHIPNTKRYIFLRGNGRGRTAIVWSESSSDNIASATFKAEAPDCIVFGISFKNEAPTGVAYTSQNQSVAAFVAADKIAFYHCAFYSTHNTLFDYKGRHYYESCYIQGSIDFIFGRARSHFHTCEIFVVDDKRITIRGSITAASRENEIEMCGYIFIKCKVYGIGGVYLGRAKGPYSRVIFANSYLSNSIVPEGWTNWSYDGPTVHLYHAEYKNHGPGARTEGRAPWSRQLTDEQVAPFLAIDYIDGKNWLPAYL 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01571 306 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 7 302 - -
Trre3g01571 306 FunFam Pectinesterase 6 306 - -
Trre3g01571 306 SUPERFAMILY Pectin lyase-like 8 304 IPR011050 -
Trre3g01571 306 ProSitePatterns Pectinesterase signature 2. 157 166 IPR033131 -
Trre3g01571 306 Gene3D - 6 305 IPR012334 -
Trre3g01571 306 Pfam Pectinesterase 13 298 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01571 Trre-Chr3 12493219 12495314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01571 8 302 Carbohydrate Esterase AT1G05310 38.079 6.33e-67 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01571 - - gmx:100792967 534.258