Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01569 ATGCTTCAGCCATTGATGAATCTTCTCTCTCCATGTTGGAAGCCGTTCGGGCACGGTGACGATTCTTCATCAGGCATTGTTGGAAGAGAAGGAAAAGACGGATTACTTTGGTTTCGTGATATTGGAAGATATGGCTCCGGTGAATTTTCCATGGCTGTTGTTCAGGCTAATCAAATTCTCGAAGATCAGAGTCAGATCGAATCTGGTCCACTTGGAACGTTCGTCGGTGTTTACGATGGTCATGGTGGACCTGATGCTGCTCGTTACGTTTGCGATCATTTGTTCCGTAATTTTCAAGCCGTATCGAGTGAGTCACGCGGTGTTGTGACGGATGAGACAATTCAATCGGCGTTTCGTTTAACGGAAGAAGGTTTTACTGCCAGGGTTTCTGAGTTATGGAATACTCGACCTCAAGTTGCAACTACTGGAACATGTTGTTTGGTTGGAGTGATTTATCAGCAGACGCTTTTTGTGGCGAATTTAGGAGATTCCCGTGTTGTTTTGGGAAAGAAAGTTGGGAATACTGGTGGGGTTGCGGCGATTCAGCTGTCTACGGAACATAATGCGAATCTTGAGGCTGTTAGACATGAACTTAAAGAATTACACCCTCATGATCCCCAGATTGTTGTCCTGAAACATGGAGTGTGGAGAGTAAAAGGCATTATACAGGTTTCTAGGTCCATAGGTGACGTATATATGAAACATGCACAGTTTAACCGGGAACCAATTAATCAGAAGTTCAGACTTCCTGAACCAATGCACATGCCTATCTTGTCTGCTAATCCATCTATTCTTTCTCATCCTCTCCATCCAAATGATTCCTTCCTTATATTTGCATCAGATGGTTTATGGGAGCACCTGAATAATGATCAAGCAGTCGAGATTGTTCACAGAAGTCCACGCGCGGGTAGTGCCAAGAGACTTATCAAGGCTGCCCTGCAGGAAGCAGCTAGAAAACGAGAAATGCGATATTCAGACCTTCGTTCGATTGACAAGAAAGTGCGACGGCATTTTCACGACGATATAACTGTTATTGTTTTATTCTTAAATCACGACCTTATAACTAGAGGCACGGTTCAAAACCCGCCACTGTCAGTTCGAAGTGCTCTCAATCACTGA 1119 0.4415 MLQPLMNLLSPCWKPFGHGDDSSSGIVGREGKDGLLWFRDIGRYGSGEFSMAVVQANQILEDQSQIESGPLGTFVGVYDGHGGPDAARYVCDHLFRNFQAVSSESRGVVTDETIQSAFRLTEEGFTARVSELWNTRPQVATTGTCCLVGVIYQQTLFVANLGDSRVVLGKKVGNTGGVAAIQLSTEHNANLEAVRHELKELHPHDPQIVVLKHGVWRVKGIIQVSRSIGDVYMKHAQFNREPINQKFRLPEPMHMPILSANPSILSHPLHPNDSFLIFASDGLWEHLNNDQAVEIVHRSPRAGSAKRLIKAALQEAARKREMRYSDLRSIDKKVRRHFHDDITVIVLFLNHDLITRGTVQNPPLSVRSALNH 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01569 372 SMART PP2C_4 35 347 IPR001932 -
Trre3g01569 372 Gene3D - 40 358 IPR036457 -
Trre3g01569 372 CDD PP2Cc 49 349 IPR001932 -
Trre3g01569 372 Pfam Protein phosphatase 2C 71 318 IPR001932 -
Trre3g01569 372 ProSitePatterns PPM-type phosphatase domain signature. 74 82 IPR000222 GO:0043169
Trre3g01569 372 PANTHER PROTEIN PHOSPHATASE 46 347 IPR015655 GO:0004722|GO:0006470
Trre3g01569 372 FunFam Probable protein phosphatase 2C 42 39 357 - -
Trre3g01569 372 ProSiteProfiles PPM-type phosphatase domain profile. 45 349 IPR001932 -
Trre3g01569 372 SUPERFAMILY PP2C-like 57 350 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01569 Trre-Chr3 12454793 12461922 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01569 1 302 PP2C-type Phosphatase Gene Family AT3G17090 69.872 5.12e-159 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01569 K01102 - gmx:100790813 639.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g01569 3 12454793 12461922 Trre3g01569 3 12454793 12461922 ECH