Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01567 ATGGCATCATCTATGATCTCAAACACAACAACAACACCACCACCACCAACAAGTGACCGATCACATAGAATAAAAAAGAAGAAAAAAGCCCAATCAAAAGCCCAACAGGCCCAAGAACAACAACAAAGGTTACAAAGCCATGCTAAATGGAGATCACAAGCCCAACAACAAATCTACTCTTCCAAACTCCACCAGGCTTTATCAAGAGTCAACCTTTCCGGTGGGCCTCGCCGTGGTAAAGCCGTCCGTGAAGCCGCCGACAGAGTTCTCGCCACTGCCGCCAAAGGAAGAACAAGGTGGAGCAGAGCCATACTCACTAACAAGCTTAGACTCAAATTCAGGAAACAAAAAAGAAATCATAATCAACAAAAAGCTATTGGGCCGGCCCGGTCTAAAAAAGCCCGGTTCGGTGTTTTACGTCTTAAAGGAAAAACACTACCAGCGGTTCAGAGAAAAGTGAAAGTTTTGGGCCGTTTAGTTCCCGGTTGTAGAAAAGAACCGTTACCGGTTATTCTTGAAGAAGCTATTGATTATATACCTGCTCTTGAGATGCAAGTTCGTGCCATGGCAGCTTTAGCTGATTTACTATTCGGCTCTTCATCTTCCGCCGTAGCCGGCGGCTCTGCTGATAGCTCCGGTTTGCCGCCGCCGAGTTAA 657 0.4642 MASSMISNTTTTPPPPTSDRSHRIKKKKKAQSKAQQAQEQQQRLQSHAKWRSQAQQQIYSSKLHQALSRVNLSGGPRRGKAVREAADRVLATAAKGRTRWSRAILTNKLRLKFRKQKRNHNQQKAIGPARSKKARFGVLRLKGKTLPAVQRKVKVLGRLVPGCRKEPLPVILEEAIDYIPALEMQVRAMAALADLLFGSSSSAVAGGSADSSGLPPPS 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01567 218 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 51 199 IPR044660 GO:0006355
Trre3g01567 218 MobiDBLite consensus disorder prediction 34 56 - -
Trre3g01567 218 Coils Coil 27 47 - -
Trre3g01567 218 CDD bHLH_AtIBH1_like 138 193 IPR044549 GO:0006355
Trre3g01567 218 MobiDBLite consensus disorder prediction 1 18 - -
Trre3g01567 218 MobiDBLite consensus disorder prediction 1 56 - -
Trre3g01567 218 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 152 197 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01567 Trre-Chr3 12441255 12441911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01567 47 200 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G06590 55.491 1.53e-51 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01567 - - gmx:100792237 258.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g01567 3 12441255 12441911 Trre3g01567 3 12441255 12441911 ECH
Trre15g04936 15 59376676 59377275 Trre3g01567 3 12441255 12441911 PCT