Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01561 ATGGATGAGAAGAAGAGAGAAGAGAACAAAAACCCCACCAACTCATCATCAACCACCACCACCACCATGACATTTTCCGATGAAATTCCGACCACCACAACCACCACCACCAACACAACTTTATTCCCTTTTCAACCTTCAATCTCCACTTTCTTTGATACTATATCATCTTCTGACCAAAAAGCTTCTTCTTTTGGATTCATGGACATGTTGGGTTCTCATGATTACATCAACAACAATTTCTTATTTTCCGATTGGGGTCTTCCCACTGTTGCTACAACTACAACTCATCATCCTCTTCCTTCGCCGGCGAGTTCTAACGTCCCAGACTCATCTGGGACTGGGACGCTGAACACTCCAGCGTCGCCTAATTCTACCTCGATTTCTTCGTCGTCTAATGAAGCCACGGTTAATGAGTCGTTAGAACAGAATAGAAGTAAAGTTTTAAGAAATGAACATGATGCAGAGGTAGAAGAAGATGTAAATGGAGGCAGAGGAGATGAACAAGATCAAGACAAGACTAAGAAACAATTGAAAGCAAAGAAGAAGAACCAGAAAAAGGAAAGAGAACCCAGATTTGCTTTCATGACAAAGAGTGAAGTTGATCACCTAGACGACGGCTATAGGTGGCGTAAATATGGTCAGAAAGCTGTAAAAAACAGTCCTTATCCCAGGAGCTACTATCGTTGTACAACGGCAAGTTGCGGCGTTAAAAAACGCGTGGAGCGTTCATCTGATGATTCTTCTATTGTCGTAACAACATATGAGGGTCAACACACACATCCTTGTCCTGCCACGTCACGTCCTAACCTCAGCTTCGTCAACGAACCTAATGCTTCGGGTTCACACTCACACTTTCTTCTACCAACATTGTTGTACAATAATAGTAGTAGTAATATTATTAACCCCACTACTAATATTACTACTACTACACCCCCTTCTTCATCTTCTTATGTTGGTGCTTCTAGTGGTACTTATCTTAACACGTCGTCGTTTGGTGGTTTTGTTCATGACCAAGGGATTAATCATATAAGGGAGGCTTTGTTAAGAGACAATGGGTTGCTTCAAGATATTTTTCAGATGAAAAAAGAGGATAAAGATTCGGTCAAAGATCAACATTAG 1122 0.4127 MDEKKREENKNPTNSSSTTTTTMTFSDEIPTTTTTTTNTTLFPFQPSISTFFDTISSSDQKASSFGFMDMLGSHDYINNNFLFSDWGLPTVATTTTHHPLPSPASSNVPDSSGTGTLNTPASPNSTSISSSSNEATVNESLEQNRSKVLRNEHDAEVEEDVNGGRGDEQDQDKTKKQLKAKKKNQKKEREPRFAFMTKSEVDHLDDGYRWRKYGQKAVKNSPYPRSYYRCTTASCGVKKRVERSSDDSSIVVTTYEGQHTHPCPATSRPNLSFVNEPNASGSHSHFLLPTLLYNNSSSNIINPTTNITTTTPPSSSSYVGASSGTYLNTSSFGGFVHDQGINHIREALLRDNGLLQDIFQMKKEDKDSVKDQH 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01561 373 MobiDBLite consensus disorder prediction 12 40 - -
Trre3g01561 373 Gene3D WRKY domain 187 265 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre3g01561 373 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 90 294 IPR044810 GO:0003700
Trre3g01561 373 ProSiteProfiles WRKY domain profile. 199 264 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre3g01561 373 MobiDBLite consensus disorder prediction 97 144 - -
Trre3g01561 373 FunFam WRKY transcription factor 57 190 264 - -
Trre3g01561 373 Coils Coil 168 188 - -
Trre3g01561 373 Pfam WRKY DNA -binding domain 205 262 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre3g01561 373 SMART WRKY_cls 204 263 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre3g01561 373 SUPERFAMILY WRKY DNA-binding domain 196 264 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre3g01561 373 MobiDBLite consensus disorder prediction 97 190 - -
Trre3g01561 373 Coils Coil 138 158 - -
Trre3g01561 373 MobiDBLite consensus disorder prediction 145 177 - -
Trre3g01561 373 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01561 Trre-Chr3 12377248 12379882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01561 117 365 WRKY Transcription Factor Family AT2G47260 48.627 1.47e-54 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre3g01561 WRKY 2.6e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01561 - - mtr:11408791 447.973