Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01529 ATGATGGAGGAATGTGATTTTCACTACCCTCCGAGTGTAATGCACAACCCTAAGAAACGGTTAAGGGAATTCGGTGACGCCGTTGATTCTCACTGTTACTCACTCGATGATTTACGCTTTCACCGTCGGATCACCGGTAATTCTCACTTGGCCCCACCTCTCCTTCAACCACAGGAAAAACTACCTGAGATGAAGAAAAAGCCTAAGCTCAAAATCAAATTCACGGGGATGTCAAAAAACGAGTCAAAATTTGGAAGGGGGGAAACAGTGGAGGTTTGCAATGATGATGAAGGTTATAAAGGTGCTTGGTTTGTTGCTACTGTTATTGACACATTAGAAAAAGAAAGGTTTTTAGTTGAATACCGAGATTTGGTGACGAATGCTGATGGTACTCAACTCCTCAAAGAAGAAATCGATGCTAAGTTTATTAGGCCGTGTCCTCCTCATGTTCCAAATTTTGGTTCTTTCAAAAAGTTACAGGAAGTTGATGCATGGTACAATGATGCTTGGTGGGAAGGTATGGTTGTTGAATTAGTGAACCCGAAAGAATGTTTTGTTCGTTTTTTGGACAATGAAGTGTTGAAAATTGAATGTTCAAAGTTACGACCACATCAAAATTGGATTAATGGAAAATGGATCATGTCTTCCAAGGAGTCGAGTGAGCTAATCAAGAAGTTTGGAGATGTGATACCAAAAGGCAACAATCTAGCCGGAACAAAATTAATTTTGAAATATCCGATTCCTTGTGAGAATGCAAAGAAACCTACAACTGTAATAACAAGGACAATATACACTAAAAGAAAATTTGATTTACATTTTCGCAAAGGGGAAAAGGTAGAAGTTCGAAGTGATGAAAAAGGCTATGAAGGTTCATGGTATTCAGCAACTGTTGTTGATTTCTTGCATAATGGAAAGTACTTGGTGGAGTATTTGACACTGAAAACAGATGACTTAACAGAACAACTGAAAGAAGAAGTAAATGTTTCGGACATTAGACCGTATCCGCCTGATACCGATCATTTTCGTCGATTTGTGACACACGAAAGGGTTGATGTTTGGTATAATGATGGATGGTGGGAAGGTGTAGTTTCTAATGTTGTTCATAGTTTCGATGGTTTCAAGTATAAGGTTTATTTTTGGACTTCAAATGAGGAGCTAGAATTTGAACATTGTTATCTTAGGCCTCATCAAGATTGGATTGATGGAAGATGGACGGTTTCTTCTTTGGTATGA 1233 0.3852 MMEECDFHYPPSVMHNPKKRLREFGDAVDSHCYSLDDLRFHRRITGNSHLAPPLLQPQEKLPEMKKKPKLKIKFTGMSKNESKFGRGETVEVCNDDEGYKGAWFVATVIDTLEKERFLVEYRDLVTNADGTQLLKEEIDAKFIRPCPPHVPNFGSFKKLQEVDAWYNDAWWEGMVVELVNPKECFVRFLDNEVLKIECSKLRPHQNWINGKWIMSSKESSELIKKFGDVIPKGNNLAGTKLILKYPIPCENAKKPTTVITRTIYTKRKFDLHFRKGEKVEVRSDEKGYEGSWYSATVVDFLHNGKYLVEYLTLKTDDLTEQLKEEVNVSDIRPYPPDTDHFRRFVTHERVDVWYNDGWWEGVVSNVVHSFDGFKYKVYFWTSNEELEFEHCYLRPHQDWIDGRWTVSSLV 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01529 410 CDD Tudor_Agenet_AtDUF_rpt2_4 348 395 - -
Trre3g01529 410 CDD Tudor_Agenet_AtDUF_rpt1_3 273 336 - -
Trre3g01529 410 SMART agenet_At_2 154 209 IPR014002 -
Trre3g01529 410 SMART agenet_At_2 342 401 IPR014002 -
Trre3g01529 410 SMART agenet_At_2 82 151 IPR014002 -
Trre3g01529 410 SMART agenet_At_2 271 339 IPR014002 -
Trre3g01529 410 Pfam Agenet domain 276 336 IPR008395 -
Trre3g01529 410 Pfam Agenet domain 87 148 IPR008395 -
Trre3g01529 410 CDD Tudor_Agenet_AtDUF_rpt1_3 84 148 - -
Trre3g01529 410 Gene3D - 72 156 - -
Trre3g01529 410 Gene3D - 262 344 - -
Trre3g01529 410 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 80 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01529 Trre-Chr3 12084589 12086879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01529 282 399 PHD Transcription Factor Family AT5G58610 32.847 1.48e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01529 - - cam:101492247 504.982