Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01520 ATGCTCCAAAATGATGATATTGATGAGTTAGACCTTAGAAGAGGTCCATGGACCGTTGATGAAGATCTTGCTCTCATCAATTACATTGCAAATCATGGTGAAGGTCGATGGAATACCCTTGCTCGTTCAGCTGGACTCAAGCGAACCGGCAAGAGTTGTAGATTGAGATGGTTGAATTATCTTCGTCCAGATGTTCGACGTGGTAACATCACACTCGAAGAACAACTTCTTATTCTTGAACTTCATAGTCGTTGGGGAAACCGATGGTCAAAAATTGCTCAATATTTGCCGGGAAGAACAGACAACGAAATAAAAAATTATTGGAGAACACGTGTCCAAAAACATGCCAAACAACTCAAATGTGACGTGAATAGCAAACAATTCAAAGATGCCATGCGCTACCTTTGGATGCCAAGACTAGTGGAGCAAATCCAAGCCGCATCCACTTCTGCCGCCACAACCACCACCACTACTAATTATGGTTCTCCTAGTGTTACAACAATGGTCACCACCAACAATCCAACATACAACCATAACAACAATTTCGAGGTTCATACGAATATGATGTTAACTCCAACAATTATAAACAGCAACAACAACAACAATAATTTATGTGGTTCGCAAGTGACACAAAGTTATACTCCGGACAATAGTAGCAATGGCGCGGCTGCATCATCGGATTCGTTTGGCACACAAGTTTCGCCTATTTCGGATTTGACTCAAGATTATTACAATGTCGCGGTTGGTAGTAACAACGGTAACAATAACCCTAATTCTGATTATTACCAACAAGCTCAACAATTTGGCTTTGATTGCATCACTAGCCCATCAGGTTTGTTCCCACAAATGGATTTCAATTCCATGGAACCAAACACTCCTTGGATTCAAGGGGACACATCCGACAATTTCTGGAATGTTGAAAACATGTTGCTCTTTCAACAACTCAATGACAACATGTGA 960 0.4104 MLQNDDIDELDLRRGPWTVDEDLALINYIANHGEGRWNTLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDAMRYLWMPRLVEQIQAASTSAATTTTTTNYGSPSVTTMVTTNNPTYNHNNNFEVHTNMMLTPTIINSNNNNNNLCGSQVTQSYTPDNSSNGAAASSDSFGTQVSPISDLTQDYYNVAVGSNNGNNNPNSDYYQQAQQFGFDCITSPSGLFPQMDFNSMEPNTPWIQGDTSDNFWNVENMLLFQQLNDNM 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01520 319 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Trre3g01520 319 CDD SANT 16 61 IPR001005 -
Trre3g01520 319 FunFam MYB transcription factor 71 134 - -
Trre3g01520 319 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Trre3g01520 319 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Trre3g01520 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Trre3g01520 319 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Trre3g01520 319 Gene3D - 71 134 - -
Trre3g01520 319 Gene3D - 11 67 - -
Trre3g01520 319 SMART sant 13 63 IPR001005 -
Trre3g01520 319 SMART sant 66 114 IPR001005 -
Trre3g01520 319 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Trre3g01520 319 CDD SANT 87 110 IPR001005 -
Trre3g01520 319 MobiDBLite consensus disorder prediction 206 231 - -
Trre3g01520 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 61 IPR017930 -
Trre3g01520 319 FunFam Myb transcription factor 14 66 - -
Trre3g01520 319 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 10 196 IPR044676 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01520 Trre-Chr3 11940049 11941859 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01520 8 314 MYB Transcription Factor Family AT5G49620 50.453 4.22e-85 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre3g01520 Myb_DNA-binding 5.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01520 K09422 - gmx:100805341 430.639