Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01519 ATGGAAGTGAAAGGAAGTTTAATTAGCAACTCAAATATCACCATGCTCCAAAATGATGATATTGATGAGTTAGACCTTAGAAGAGGTCCATGGACCGTTGATGAAGATCTTGCTCTCATCAATTACATTGCAAATCATGGTGAAGGTCGATGGAATACCCTTGCTCGTTCAGCTGGACTCAAGCGAACCGGCAAGAGTTGTAGATTGAGATGGTTGAATTATCTTCGTCCAGATGTTCGACGTGGTAACATCACACTCGAAGAACAACTTCTTATTCTTGAACTTCATAGTCGTTGGGGAAACCGATGGTCAAAAATTGCTCAATATTTGCCGGGAAGAACAGACAACGAAATAAAAAATTATTGGAGAACACGTGTCCAAAAACATGCCAAACAACTCAAATGTGACGTGAATAGCAAACAATTCAAAGATGCCATGCGCTACCTTTGGATGCCAAGACTAGTGGAGCAAATCCAAGCCGCATCCACTTCTGCCGCCACAACCACCACCACTACTAATTATGGTTCTCCTAGTGTTACAACAATGGTCACCACCAACAATCCAACATACAACCATAACAACAATTTCGAGGTTCATACGAATATGATGTTAACTCCAACAATTATAAACAGCAACAACAACAACAATAATTTATGTGGTTCGCAAGTGACACAAAGTTATACTCCGGACAATAGTAGCAATGGCGCGGCTGCATCATCGGATTCGTTTGGCACACAAGTTTCGCCTATTTCGGATTTGACTCAAGATTATTACAATGTCGCGGTTGGTAGTAACAACGGTAACAATAACCCTAATTCTGATTATTACCAACAAGCTCAACAATTTGGCTTTGATTGCATCACTAGCCCATCAGGTTTGTTCCCACAAATGGATTTCAATTCCATGGAACCAAACACTCCTTGGATTCAAGGGGACACATCCGACAATTTCTGGAATGTTGAAAACATGTTGCTCTTTCAACAACTCAATGACAACATGTGA 1002 0.4072 MEVKGSLISNSNITMLQNDDIDELDLRRGPWTVDEDLALINYIANHGEGRWNTLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDAMRYLWMPRLVEQIQAASTSAATTTTTTNYGSPSVTTMVTTNNPTYNHNNNFEVHTNMMLTPTIINSNNNNNNLCGSQVTQSYTPDNSSNGAAASSDSFGTQVSPISDLTQDYYNVAVGSNNGNNNPNSDYYQQAQQFGFDCITSPSGLFPQMDFNSMEPNTPWIQGDTSDNFWNVENMLLFQQLNDNM 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01519 333 CDD SANT 101 124 IPR001005 -
Trre3g01519 333 Pfam Myb-like DNA-binding domain 28 75 IPR001005 -
Trre3g01519 333 Pfam Myb-like DNA-binding domain 81 124 IPR001005 -
Trre3g01519 333 SUPERFAMILY Homeodomain-like 25 122 IPR009057 -
Trre3g01519 333 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 24 210 IPR044676 GO:0003700|GO:0006355|GO:0043565
Trre3g01519 333 MobiDBLite consensus disorder prediction 220 245 - -
Trre3g01519 333 FunFam Myb transcription factor 28 80 - -
Trre3g01519 333 Gene3D - 25 81 - -
Trre3g01519 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 76 130 IPR017930 -
Trre3g01519 333 ProSiteProfiles Myb-like domain profile. 23 75 IPR001005 -
Trre3g01519 333 FunFam MYB transcription factor 85 148 - -
Trre3g01519 333 Gene3D - 85 148 - -
Trre3g01519 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 25 75 IPR017930 -
Trre3g01519 333 CDD SANT 30 75 IPR001005 -
Trre3g01519 333 ProSiteProfiles Myb-like domain profile. 76 126 IPR001005 -
Trre3g01519 333 SMART sant 27 77 IPR001005 -
Trre3g01519 333 SMART sant 80 128 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01519 Trre-Chr3 11940007 11941859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01519 22 328 MYB Transcription Factor Family AT5G49620 50.453 4.23e-85 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre3g01519 Myb_DNA-binding 5.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01519 K09422 - gmx:100805341 441.81