Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01504 ATGGGTTGCGGTGGAAATATGTCAAGCGCATGTACATATGACTCGGCTACCTTTGTTGTCACTGGTGAAAGGTTTGTAGCACAAGATATATCTTTTCAGAACACTGCAGGCCCAGAAAATGACCAAGCAGTAGCACTAAAATCAGACTCTGACTTCTCCGCCTTCTATAGAGTTGGGATTTTTGGTTACCAGGATAGTTTATGCGCAAACACAAATCGACAATTTTATAGAGAATGTAAAATTAGTGGCACCGTCGACTTCATTTTTGGATATGCCACTGCAGTGTTCCAAAGCTGTGAGATTTTGGTCAAAAAAGGGAAGCCAGAGCAAAAGAATACAATCACAGCTCAAGGAGGATACCAAGGAAAAATGTTTGGTTTCTCGTTTCAATTTTGCAATATATTTGCTGATATTGATCTTTTACCCTCAGTTAGTTCAACCTCATCGTTTCTCGGTAGGCCATGGAAACAATATTCAAGAGTAGTTTTCATGCAATCAAACATAAGTGATGTCCTAAGTCCGCAAGGGTGGTTAGAGTGGGAAGGGTCTCCCGAATATTTAGATACATTGTATTACGCAGAATATAATAATTGTGGACCAGGAGCAAATATAGATCACCGAGTGAAATGGTCAGGCTACCATTTGTTGAATGATAATCAAGCTAGTAACTTCACGGTGGCCAACTTCATTTCGGGTGATCAATGGTTACCTTCCACAGGGATACCGTATATTAGTGGGTTTGGGGATCAAAACAACACTCTGTGTAAAATGTAA 774 0.4018 MGCGGNMSSACTYDSATFVVTGERFVAQDISFQNTAGPENDQAVALKSDSDFSAFYRVGIFGYQDSLCANTNRQFYRECKISGTVDFIFGYATAVFQSCEILVKKGKPEQKNTITAQGGYQGKMFGFSFQFCNIFADIDLLPSVSSTSSFLGRPWKQYSRVVFMQSNISDVLSPQGWLEWEGSPEYLDTLYYAEYNNCGPGANIDHRVKWSGYHLLNDNQASNFTVANFISGDQWLPSTGIPYISGFGDQNNTLCKM 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01504 257 PANTHER PECTINESTERASE 6 237 - -
Trre3g01504 257 Gene3D - 3 249 IPR012334 -
Trre3g01504 257 FunFam Pectinesterase 4 4 247 - -
Trre3g01504 257 Pfam Pectinesterase 8 233 IPR000070 GO:0030599|GO:0042545
Trre3g01504 257 ProSitePatterns Pectinesterase signature 2. 81 90 IPR033131 -
Trre3g01504 257 SUPERFAMILY Pectin lyase-like 7 246 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01504 Trre-Chr3 11780648 11781692 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01504 12 247 Carbohydrate Esterase AT3G43270 60.084 1.87e-99 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01504 K01051 - gmx:100798620 324.324