Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01491 ATGGCAACAACAGAGGCAGCTTCTGCTGGTGTTGGTCCTAGATATGCACCGGATGATCCATCGCTACCGGTGCCGTGGAAAGGGTTGATTGATGGAGCTACTGGTTTGTTATACTATTGGAATCCTGATACTAATGTTACTCAGTATGAAAAGCCAACACCGTTGGCTCCGCCTGTGCCGGCAGCTTCTATGCCGAGCTTGGCGCCTATACCGGTGGCTCAACAGCATGGGCAAGGGCAACAGATGATGCAACAACAGCAGGGGGGTCACTTTGCTCAACAGCATGGGCAAGGTCAACAGATGTCGCAGCAGATGAGTCCTCATGTGGCACAGGGGACTCAGCAGCCGAATTCTCAGGCTGCTGCTCAACCTGTGCAGCAGCAGAACTCGCAGATTTCACAGCAGGCGCAACAGCCGGGATTACAGCAAGGTAGACCGCAAATGATGCAGCCTCAGGGGCAGCAGATGATGCAGTATCAAGGACAGCAGTTTCAGCAAATGCATCATCAGATTCCTCCACAGGTGATTCGTCCACAACAATTTGGGCAAGGAGGTACTCAAGATCACGGTTCGCATATTGTGCAACCGCAAGCGCCTCAGTTTACTCCTCAGAACATGCATTATATGGGATATCAACAAAACATGGTTACACCTAGGCAACCTAACCCCCAGCAGATTCAACCAAATATGCACCCATCTGGGCAACCAAATACCCAGCAGAATCAACATCCGCATAACATTCATAACCAGACTTTTGAAAATCAACAAGATTTTAAAACAGCGGTGCCAAAGATGGAGGAGGCAGAGTTTAAAAATGGAAGCCAAGTTGGTTTCTCACCATCACAGTATCAACAAAGGAGTACCTTGCCTGTTCAGAACAATAAAAATGTTCCTGCTGAAGTTAGTTCTGGTCAAGTTCCTAGTGCAGGTGTTAATGCTGGCCAACCACAACAATTTAGGGGCTATCCAGGAAGCATGCAACAGCCTAGCCCGACAATGCAGTCACAGCAGGGTGGTTCTGATTTATATTACCAACATGGTCCTAACTTTCAAAACCAGATGAGCCCGGGAATAATGGCTGGTCATCCATCCAATGTGCATCCTGTTGCCCAAAAGATGGGATATGAGGACAATGTACATGGTAGAGCTGGAAATGACTATTACTATAATTCTAACAAAGAGATGCCGCCGATGGGTCGTCAGCAGCCAGATATGACTGAAATGCCGATTTCTAGAAATCCGCAGGATATGAGGATCGGCAATTCCCCTTTTCAAAATAATGTCCCCATTGGAAATGGAAGTGGTATTACTGTGAATGCTATGGGTAACATGTTCACTCCTCCAATAGGTGGAGGAGGACCTTCTCCTCTTTCAAGCAACTCTTTTACGAGGCCTCCTTATGGTGGATCTTCAGATGTTACTGATCTCTCAGCAGCTGAATTATACTGTCAGCAACATGAAGTTACAGCAACGGGTGACAACATTCCACCCCCATTCATGACATTTGATTCTACCGGGTTCCCTCCAGAGATATTGCAAGAGGTACGTTCTGCGGGTTTCTCGAATCCAACACCAATACAGGCTCAAACATGGCCCATTGCCCTACAGGGTAGAGACATAGTGGCTATTGCCAAAACAGGCTCTGGGAAAACACTAGGCTACTTAATGCCGGCCTTCATTCTTCTCAGGCAGAGACGCAATAATTCTCTGAATGGCCCCACTGTATTGGTTTTGGCTCCAACACGTGAACTTGCAACACAGATCCAAGAGGAGGTCTTCAAATTTGCACGGTCTTCAAGAGTATCTTGCACGTGCTTGTATGGTGGAGCGCCTAAAGGCCTTCAGCTAAAGGAGTTAGATCGTGGGGCAGACATTGTTGTTGCCACACCTGGCAGGCTTAATGATATACTTGAAATGAAAAAAATTGACTTTAGGCAAGTTTCATTCCTTGTGCTTGATGAGGCTGACCGAATGCTTGATATGGGTTTTGAGCCTCAAATCCGTAAGATTGTGAATGAGATTCCACCACGTAGACAAACTCTCATGTACACTGCAACCTGGCCAAAAGAAGTTAGAAAAATTGCCGGCGATCTTCTTGTTAATCCTGTTCAGGTTAACATTGGAAATGTAGACGAGCTTGCTGCAAATAAATCTATCACACAGTATGTTGAAGTTGTCCCACAAATGGAGAAACAGAGGCGTCTAGAGCAGATCCTTAGATCCCAGGAACGGGGTTCTAAGATTATAATATTTTGTTCCACAAAAAAGTTATGTGATCAGCTTGCTCGTAGTATTGGCCGAACTTTTGGGGCTGCTGCAATTCACGGTGACAAGTCTCAAGGTGAGAGAGACTGGGTTTTAGGTCAGTTCCGGACTGGGAAATCTCCAATTTTGGTTGCCACCGATGTTGCTGCTCGTGGTCTTGATATTAAGGATATAAGGGTGGTGATCAACTATGATTTCCCCAATGGTGTTGAGGACTATGTACACCGAATTGGAAGAACTGGAAGGGCAGGTGCTACTGGAGTTGCATATACCTTTTTCTCTGAGCAGGATTGGAAACACGCAGGTGATTTGATCAAAGTTTTGGAGGGTGCTAACCAGCATGTGCTTCCAGAGTTAAGACAGATTGCTTCACGTGGGCCACCAAGCTTTGGAAAGGATAGAGGCGGGATGAGTCGGTTTGACTCTGGTGGTGGTGGTGGGCGCTGGGAGAGTGGTGGTCGTGGGAGTATGAGGGACAGTGGATTTGGCGGTCGCGGAGGCATGAGGGATGGTGGTGGGTTTGGCGGTCGTGGGGGCATGCGGGATGGTGGTGGCTTTGGGGGTCGCGGTGGCGGTGGAATGAGGGATGGAGCTGGCGGACAAGGTGGGAGAGGTGATTTCATTCCTGGTAGGGGGGGCAACAGGGGTAGAGGATTTGGTGCTCCACGTGGGGGCAGTGTTGGCTGGGGTAGGGGTGATCGTGGTGGTCCTAGTGATCGGTACATGGATGCTCATGGACAAGGACGTGGACGGGGACGATTTGACAACAGAAGAGATGCTCCGAGAAGTAGAGACAGAAGTTACAGTCGGAGCCCTGATAGAGTTCGAACATGGGATATTAACAGAAGCAGCAGCAGGAGTAGAAGTAGAAGTAGGAGTAGGAGCTATAGCCGTAGCCGTAGTCCCCGTCGCAGCTGGTCTCGAGGTCGCAGTCGCAGCTATAGCCGCAGTCGTAGTCCTCGTCGGAGTCGTAGCCGTGGTCGTAGCTATAGCCGTAGCCGCAGCCCCAAACCTACAAGGCGTGTTAAGTCAAAATTTTCTGATAAGATTGATATCGTGCCACCTGAAGCAGGAGCTTCTGATCCTAAAATGTTCCCTATACCTGGCAACACCGAAGGAAATTCTGTTTTGGGAACAGAACATGTGGAGCCCCCACCTGTTATGGGGAACTCTGGCCCAAATAATCCAGAGGCTGTAGTCGACCATGTTGCAGAAACCAACTCCTTCTCAATTTTCACTCTCCAATTCAATTTCTTCTACACGCTTTTCGCAAAATATGAATTGATTCATTATCTTCTTCTTTTGAGTGGTAGCTGTTGTGATATGGAAATGTATGATGTTTCTGAAACTAGGAACCCGGATGCTTACTGGATTGAAGGGGCTGATTTAAATTCACAGTTTACTAGCCCAAACTTTGAACAATCTGGAGTAATGATTAATGAAGGAGTCCCTGAATTTGTTGACCAGAGCATGTATTACCCTGCTGCCACCAATTATGGGTATTATTGTACAGGATTTGAATCACCCGGGGAATGGGAGGACCAGTGTCGGATTTTTGGTATAGATGGTCCTGATGTCCAGTACACGGGTGGACAAAATGAAAGTTTTCCGTATGTATATTATAACTACGGATATGCACAGTCTCCATACAATCCATATAATCCGTACATACCTGGTGCTGTGATGGGAGTTGATGGCTCATTTGGCGGAGGACAACCTTATTACACCCTCCCCAATTATCAAAATACTGCTTCTTCACCTGCTTATGTTCCCCTTGTTCAACAAGACAATTTTCCTGATAGTTCTGCAAACTTGTTGTTTGGGACCAGCACTTCTGTCAGTACACCTGATGGAAGAGGTTTGAAACCTAAGTTCAATTCAACTTCTGGTAACTTTTCTAGGAACTGTTCACAACTTTTGCCAAATCAGACAAGTTCCTTGGCCAGGGTATCAGAAGGGCCGAGAGCTAATGATGGGAGGAAGCAGGATTTGACACATGCAAGTGCTTCTGGAAGTAGGTTTCTCAACTTAGCTTCATCATCTGTTCATCAGGATAAAAGTTCTGATGCTTCAGTGCAACCTGTACATACTATTTCTAATGGGAATGTTATTTCTCATCGTAATCAATTGAAAGTACCTTCTTCAAGAATTGGATTTTCTGGTGTAGCATCAAATAATAATGGACAGTCTGCAGTTGCTAAACATAAGCCGAAGGCTGACATATCGAAAGTATCAAGTGATGGAAATGGTAGCGCTGATGTATTAGGTGAGCAAAATCGAGGCCCTAGGACTAGTAGATCAAAACATCAGCTGTCTGTGAAAGCTTATACAACCAAGGTAGGAGGTGGTAACGAGGAAGGAAAGATCATCATTTATACCGATCAATACAACAAGGAGGATTTCCCTCTTGATTATGATAATGCAAAGTTTTTTGTTATAAAATCATACAGTGAGGATGATGTGCACAAAAGCATTAAATACAATGTGTGGTCTTCTACACCTCATGGAAACAAGAAGCTGGGAAATGCTTATGAGGATGCAAAGAAAGTATCAGCTGAAAAATCTGGAGTCTGTCCAATCTTCCTATTTTTTTCTGTTAATGCCAGTGGTCAATTCTGTGGAGTTGCAGAGATGATTGGTTCAGTTGATTTTAATAAGGATATGGACTTTTGGCAGCAAGATAAATGGAATGGGAGCTTTCCTGTAAAGTGGCATATCATAAAAGATGTACCAAATGCTAACTTTAGGCACATTGTACTAGAGAACAATGAAAACAAGCCAGTAACTAATAGCAGAGATACACAAGAGATAATGTATTGTAAAGGATTGGAAATGCTGAAAATATTCAAAAATCATACTTTGAAGACATCTTTGCTTGACGACTTCATGTATTATGAAAACCGTCAGAAGATCATGCAGGATGAGAAAGCCAGGCTCCTAATCAGAAGTTTCGAAAGTCCATTATTCTTACCAGCATTGGAAGCTCCTCGAAAGTTGAATTTTGTTGTTGACAAACTGCCCAGCAAATATGAGAAGAATTCAAAGCTTAAGGATGATTCTGATAGCTTAAACCAGATGTCCATTTCAAGCACTGAGCAGAACATCCATAATTCTGATGTCCCTAATATCAAGTCTGTGAATGAGCAGGCTGAGAAAACTGCAGTTGATGAAGATATTTCCTCTATCTTAAAGATCGGTTCAGTCACTATTACCCCAAAGAAGGTTGAGACAAAACAATCTGGCATTGGTAACAGAGAACAATTTGATGTTCTTACAGTAGGCTCAATGCCAGTTAAGGTTAACGGGTTCGCTGGCTCTTCTGGTTTCTTGAAAGTTGGCAGTATACAACTTGACCCAAAAACATTACAACCGTAA 5640 0.4496 MATTEAASAGVGPRYAPDDPSLPVPWKGLIDGATGLLYYWNPDTNVTQYEKPTPLAPPVPAASMPSLAPIPVAQQHGQGQQMMQQQQGGHFAQQHGQGQQMSQQMSPHVAQGTQQPNSQAAAQPVQQQNSQISQQAQQPGLQQGRPQMMQPQGQQMMQYQGQQFQQMHHQIPPQVIRPQQFGQGGTQDHGSHIVQPQAPQFTPQNMHYMGYQQNMVTPRQPNPQQIQPNMHPSGQPNTQQNQHPHNIHNQTFENQQDFKTAVPKMEEAEFKNGSQVGFSPSQYQQRSTLPVQNNKNVPAEVSSGQVPSAGVNAGQPQQFRGYPGSMQQPSPTMQSQQGGSDLYYQHGPNFQNQMSPGIMAGHPSNVHPVAQKMGYEDNVHGRAGNDYYYNSNKEMPPMGRQQPDMTEMPISRNPQDMRIGNSPFQNNVPIGNGSGITVNAMGNMFTPPIGGGGPSPLSSNSFTRPPYGGSSDVTDLSAAELYCQQHEVTATGDNIPPPFMTFDSTGFPPEILQEVRSAGFSNPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLMPAFILLRQRRNNSLNGPTVLVLAPTRELATQIQEEVFKFARSSRVSCTCLYGGAPKGLQLKELDRGADIVVATPGRLNDILEMKKIDFRQVSFLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIAGDLLVNPVQVNIGNVDELAANKSITQYVEVVPQMEKQRRLEQILRSQERGSKIIIFCSTKKLCDQLARSIGRTFGAAAIHGDKSQGERDWVLGQFRTGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRAGATGVAYTFFSEQDWKHAGDLIKVLEGANQHVLPELRQIASRGPPSFGKDRGGMSRFDSGGGGGRWESGGRGSMRDSGFGGRGGMRDGGGFGGRGGMRDGGGFGGRGGGGMRDGAGGQGGRGDFIPGRGGNRGRGFGAPRGGSVGWGRGDRGGPSDRYMDAHGQGRGRGRFDNRRDAPRSRDRSYSRSPDRVRTWDINRSSSRSRSRSRSRSYSRSRSPRRSWSRGRSRSYSRSRSPRRSRSRGRSYSRSRSPKPTRRVKSKFSDKIDIVPPEAGASDPKMFPIPGNTEGNSVLGTEHVEPPPVMGNSGPNNPEAVVDHVAETNSFSIFTLQFNFFYTLFAKYELIHYLLLLSGSCCDMEMYDVSETRNPDAYWIEGADLNSQFTSPNFEQSGVMINEGVPEFVDQSMYYPAATNYGYYCTGFESPGEWEDQCRIFGIDGPDVQYTGGQNESFPYVYYNYGYAQSPYNPYNPYIPGAVMGVDGSFGGGQPYYTLPNYQNTASSPAYVPLVQQDNFPDSSANLLFGTSTSVSTPDGRGLKPKFNSTSGNFSRNCSQLLPNQTSSLARVSEGPRANDGRKQDLTHASASGSRFLNLASSSVHQDKSSDASVQPVHTISNGNVISHRNQLKVPSSRIGFSGVASNNNGQSAVAKHKPKADISKVSSDGNGSADVLGEQNRGPRTSRSKHQLSVKAYTTKVGGGNEEGKIIIYTDQYNKEDFPLDYDNAKFFVIKSYSEDDVHKSIKYNVWSSTPHGNKKLGNAYEDAKKVSAEKSGVCPIFLFFSVNASGQFCGVAEMIGSVDFNKDMDFWQQDKWNGSFPVKWHIIKDVPNANFRHIVLENNENKPVTNSRDTQEIMYCKGLEMLKIFKNHTLKTSLLDDFMYYENRQKIMQDEKARLLIRSFESPLFLPALEAPRKLNFVVDKLPSKYEKNSKLKDDSDSLNQMSISSTEQNIHNSDVPNIKSVNEQAEKTAVDEDISSILKIGSVTITPKKVETKQSGIGNREQFDVLTVGSMPVKVNGFAGSSGFLKVGSIQLDPKTLQP 1879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01491 1879 MobiDBLite consensus disorder prediction 878 1121 - -
Trre3g01491 1879 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 734 878 IPR001650 -
Trre3g01491 1879 CDD YTH 1564 1704 IPR007275 GO:0003723
Trre3g01491 1879 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 571 854 IPR027417 -
Trre3g01491 1879 ProSiteProfiles WW/rsp5/WWP domain profile. 20 54 IPR001202 GO:0005515
Trre3g01491 1879 ProSitePatterns WW/rsp5/WWP domain signature. 26 52 IPR001202 GO:0005515
Trre3g01491 1879 MobiDBLite consensus disorder prediction 218 245 - -
Trre3g01491 1879 ProSiteProfiles YTH domain profile. 1563 1704 IPR007275 GO:0003723
Trre3g01491 1879 SMART ww_5 21 54 IPR001202 GO:0005515
Trre3g01491 1879 FunFam ATP-dependent RNA helicase RhlB 709 881 - -
Trre3g01491 1879 MobiDBLite consensus disorder prediction 1 23 - -
Trre3g01491 1879 Pfam Helicase conserved C-terminal domain 731 839 IPR001650 -
Trre3g01491 1879 MobiDBLite consensus disorder prediction 73 154 - -
Trre3g01491 1879 SMART helicmild6 759 839 IPR001650 -
Trre3g01491 1879 SMART ultradead3 519 722 IPR014001 -
Trre3g01491 1879 MobiDBLite consensus disorder prediction 1042 1095 - -
Trre3g01491 1879 Pfam DEAD/DEAH box helicase 524 694 IPR011545 GO:0003676|GO:0005524
Trre3g01491 1879 Pfam YT521-B-like domain 1563 1705 IPR007275 GO:0003723
Trre3g01491 1879 Gene3D - 475 709 IPR027417 -
Trre3g01491 1879 SUPERFAMILY WW domain 14 54 IPR036020 GO:0005515
Trre3g01491 1879 FunFam probable ATP-dependent RNA helicase DDX17 467 708 - -
Trre3g01491 1879 MobiDBLite consensus disorder prediction 1364 1390 - -
Trre3g01491 1879 Gene3D ph1033 like domains 1544 1719 - -
Trre3g01491 1879 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 475 878 - -
Trre3g01491 1879 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 651 659 IPR000629 -
Trre3g01491 1879 Gene3D - 710 880 IPR027417 -
Trre3g01491 1879 MobiDBLite consensus disorder prediction 1476 1525 - -
Trre3g01491 1879 MobiDBLite consensus disorder prediction 1499 1525 - -
Trre3g01491 1879 MobiDBLite consensus disorder prediction 991 1041 - -
Trre3g01491 1879 CDD WW 23 54 IPR001202 GO:0005515
Trre3g01491 1879 CDD SF2_C_DEAD 719 848 - -
Trre3g01491 1879 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 500 528 IPR014014 GO:0003724
Trre3g01491 1879 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 531 705 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01491 Trre-Chr3 11667344 11682685 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01491 488 859 Eukaryotic Initiation Factors Gene Family AT3G19760 34.667 6.94e-66 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01491 K12823 - gmx:100807830 1269.22