Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01489 ATGGCCATGGAAACCGATGCTGTCACCACTCCACACTTGGCGCTCTCTGATACAGACATCAACTGGGACAGGTTGGATAAGACTAGATTCCACATTATTGGTGCAATACTCTTCACAGCTCAATCAGCATTACTTCATCCAACAGCAGTGGTGAAGACAAGGATGCAAGTAGCTAGTTCGGGACTCTCCAACATGAAGGGAACCTCGGTGTTCACTCATATTTTGAGGAGTGATGGAATTCCTGGAATTTTTAGAGGTTTTGGAACTTCTGCTATTGGATCAATGCCTGGTAGGGTTTTAGCCCTCACATCTCTTGAGATGTCAAAGGATTTTATGTTGAAACACACACAAGGTAGTGATATTCCAGAAGCATCGCGGATTGGCCTTGCAAATGGTGTTGCTGGAATGGTTTCAAATTTGGTATCTTGTGTTTACTTCGTGCCTTTAGATGTGATCTGCCAAAGGTTAATGGTTCAAGGGCTTCCGGGAACTACATGTTGTAGAGGACCGTTCGATGTTATCCGTAGAGTAGCGCATGCTGAGGGTTTTCGCGGCTTATATAGAGGTTTTGGATTAACGGCTGTAACACAATCTCCAGCATCTGCACTTTGGTGGGGATCATATGGTGCTGCACAACACATAATTTGGAGGAGTTTAGGCTACAAAGATGATATGGAGAAGAAGCCTTCGCACGTGGAAATGGTGACAGTTCAGGCTACTGCCGGGATGGTGGCTGGTGCTTGTTCCTCTGTCATCACTACTCCCATAGATACTGTAAAAACACGACTTCAGGTTATGGACAACTACGGTTCTGGAAGACCATCGGTACTAAAGACAGCAAAAACTCTCCTTAAGGAAGATGGATGGTGGGGATTTTACAGAGGGTTTGGACCAAGATTTTTGAACATGTCACTTTATGGAACAACTATGATTGTTACCTATGAACTAATAAAGAGATTATCAGTACAACCAAGTCTAAAGTCTTTTGCTTAA 993 0.4371 MAMETDAVTTPHLALSDTDINWDRLDKTRFHIIGAILFTAQSALLHPTAVVKTRMQVASSGLSNMKGTSVFTHILRSDGIPGIFRGFGTSAIGSMPGRVLALTSLEMSKDFMLKHTQGSDIPEASRIGLANGVAGMVSNLVSCVYFVPLDVICQRLMVQGLPGTTCCRGPFDVIRRVAHAEGFRGLYRGFGLTAVTQSPASALWWGSYGAAQHIIWRSLGYKDDMEKKPSHVEMVTVQATAGMVAGACSSVITTPIDTVKTRLQVMDNYGSGRPSVLKTAKTLLKEDGWWGFYRGFGPRFLNMSLYGTTMIVTYELIKRLSVQPSLKSFA 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01489 330 ProSiteProfiles Solute carrier (Solcar) repeat profile. 233 320 IPR018108 -
Trre3g01489 330 ProSiteProfiles Solute carrier (Solcar) repeat profile. 126 214 IPR018108 -
Trre3g01489 330 Pfam Mitochondrial carrier protein 130 216 IPR018108 -
Trre3g01489 330 Pfam Mitochondrial carrier protein 237 321 IPR018108 -
Trre3g01489 330 Pfam Mitochondrial carrier protein 32 115 IPR018108 -
Trre3g01489 330 ProSiteProfiles Solute carrier (Solcar) repeat profile. 26 111 IPR018108 -
Trre3g01489 330 Gene3D Mitochondrial carrier domain 117 325 IPR023395 -
Trre3g01489 330 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 11 323 - -
Trre3g01489 330 SUPERFAMILY Mitochondrial carrier 23 316 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01489 Trre-Chr3 11660761 11664005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01489 17 320 Chloroplast and Mitochondria Gene Families AT5G15640 50.654 9.26e-106 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01489 K15121 - gmx:112997745 574.318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g01489 3 11660761 11664005 Trre3g01489 3 11660761 11664005 ECH