Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01477 ATGGACAATTATCAAGGCGATTTAACCGACATAATCAGAGCTCCCGGTACTACTACTACTGCTACTACTACTACTGCCGGAGCATATAGTACATCATCATCTGAACATGTTTTACAACATGTTCATGATAATCATTGGCACCATCAACATCATAATCAACAATTATTCTCTTCTTCTTCTTCTTCTTCTCATCATAATCAACAACCTATGAGTTTTGCTAATTCTATTCTTGAAGGAACAAACATGAATAACAACATGTTTGGTGATCCATTATTCTCATCTTTAAGAGATCCATTTCTACAAGAACTTGATCATATACCTTCATCTTCTTACTTCAACATCACAAATAATAATACTACTACTACTACTGCTATTACTACTACTTCACCGGCTTCGACTTCTATAATTAATGTTTCTGATGTTTCTAATGTTAGTACTTCTATTTTCGCTCTTGATCATAATCGCGAGATTAGATCAAATTCAAGACCATGTAAGAATATATTCTCAAACATGATTCAGATCTCTCCTAATCCAAAGTTACCAATTAATTATGAATCTTCTTCAACTATGGCACCTTCTCCAAGACAAATTAAACAAGTTGTTTCAACCAACATCAATATTAATGCTAATATCTCAAAGGATTCTCTTCTAGATAACACAGGAGTTCAGATCTCATCTTCAAGGAATTCATCTGGTCTTAAAAGAAGGAAGAATCAGGCAAAAAAGGTGGTTTGTATTCCTGCACCAGCAGCTGCAAATAGTAGACAAACTGGAGAAGTAGTTCCTTCAGATTTGTGGGCTTGGAGAAAATATGGTCAGAAACCCATTAAAGGTTCACCTTATCCAAGGGGTTACTATAGATGCAGCAGTTCTAAGGGATGTTCTGCAAGGAAACAAGTTGAGAGAAGCAGAACAGATCCAAACATGTTAGTTATCACTTACACTTCAGAACACAATCATCCATGGCCAACACAAAGAAATGCTTTAGCAGGTTCAACAAGATCTCAACCATCCAAAAACAATACTTCAATGAAAAATTCAGAAACTTCTTTGACTCAAAATGACACAACAAAACCAAAAGAAGAACATCAAGAGAATAATAATAATAATAGTGATGGAAATGATTCTCCAATTGTTAACAATGTGAAGGAAGAGAATATGGAAGATATAGAGAAGCTACAAATTGATATGGATGAAGTTGAAGGAGAATTTAGTGATGGACTTTCTTATAAACCTTCTATGATTGAAAATAATCAAAGTCATGAAGATTTTTTTGCTGAGTTAGGTGAAATTGAAACTGATCCATTAAACCTATTGTTTAATCAAGGTTTTGGTGGTAATTCAAGTACTAATGATGTTCATCAAAGGGATAATCAATCCAAGGGTTTAGATCCATTTAATCTCTTTGACTGGTCAGTGGACAACAATAATACCAACAATTCAATGGAAGAACCAAGTAAGAGAAGGTTGCTATGA 1476 0.3415 MDNYQGDLTDIIRAPGTTTTATTTTAGAYSTSSSEHVLQHVHDNHWHHQHHNQQLFSSSSSSSHHNQQPMSFANSILEGTNMNNNMFGDPLFSSLRDPFLQELDHIPSSSYFNITNNNTTTTTAITTTSPASTSIINVSDVSNVSTSIFALDHNREIRSNSRPCKNIFSNMIQISPNPKLPINYESSSTMAPSPRQIKQVVSTNININANISKDSLLDNTGVQISSSRNSSGLKRRKNQAKKVVCIPAPAAANSRQTGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHPWPTQRNALAGSTRSQPSKNNTSMKNSETSLTQNDTTKPKEEHQENNNNNSDGNDSPIVNNVKEENMEDIEKLQIDMDEVEGEFSDGLSYKPSMIENNQSHEDFFAELGEIETDPLNLLFNQGFGGNSSTNDVHQRDNQSKGLDPFNLFDWSVDNNNTNNSMEEPSKRRLL 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01477 491 Gene3D WRKY domain 236 316 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre3g01477 491 FunFam probable WRKY transcription factor 14 236 316 - -
Trre3g01477 491 MobiDBLite consensus disorder prediction 46 68 - -
Trre3g01477 491 Coils Coil 383 403 - -
Trre3g01477 491 MobiDBLite consensus disorder prediction 279 380 - -
Trre3g01477 491 SMART WRKY_cls 262 322 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre3g01477 491 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 6 440 IPR044810 GO:0003700
Trre3g01477 491 Pfam WRKY DNA -binding domain 264 321 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre3g01477 491 SUPERFAMILY WRKY DNA-binding domain 260 323 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre3g01477 491 ProSiteProfiles WRKY domain profile. 257 323 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre3g01477 491 MobiDBLite consensus disorder prediction 51 68 - -
Trre3g01477 491 MobiDBLite consensus disorder prediction 306 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01477 Trre-Chr3 11457904 11461075 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01477 1 451 WRKY Transcription Factor Family AT2G34830 41.915 1.36e-88 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre3g01477 WRKY 2.8e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01477 - - aprc:113852911 514.227