Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01476 ATGTGTAGTAGCATATTTGTCTCATCATCATCATCATCATCATCAATAACATCAAAAACTATGGACAATTATCAAGGCGATTTAACCGACATAATCAGAGCTCCCGGTACTACTACTACTGCTACTACTACTACTGCCGGAGCATATAGTACATCATCATCTGAACATGTTTTACAACATGTTCATGATAATCATTGGCACCATCAACATCATAATCAACAATTATTCTCTTCTTCTTCTTCTTCTTCTCATCATAATCAACAACCTATGAGTTTTGCTAATTCTATTCTTGAAGGAACAAACATGAATAACAACATGTTTGGTGATCCATTATTCTCATCTTTAAGAGATCCATTTCTACAAGAACTTGATCATATACCTTCATCTTCTTACTTCAACATCACAAATAATAATACTACTACTACTACTGCTATTACTACTACTTCACCGGCTTCGACTTCTATAATTAATGTTTCTGATGTTTCTAATGTTAGTACTTCTATTTTCGCTCTTGATCATAATCGCGAGATTAGATCAAATTCAAGACCATGTAAGAATATATTCTCAAACATGATTCAGATCTCTCCTAATCCAAAGTTACCAATTAATTATGAATCTTCTTCAACTATGGCACCTTCTCCAAGACAAATTAAACAAGTTGTTTCAACCAACATCAATATTAATGCTAATATCTCAAAGGATTCTCTTCTAGATAACACAGGAGTTCAGATCTCATCTTCAAGGAATTCATCTGGTCTTAAAAGAAGGAAGAATCAGGCAAAAAAGGTGGTTTGTATTCCTGCACCAGCAGCTGCAAATAGTAGACAAACTGGAGAAGTAGTTCCTTCAGATTTGTGGGCTTGGAGAAAATATGGTCAGAAACCCATTAAAGGTTCACCTTATCCAAGGGGTTACTATAGATGCAGCAGTTCTAAGGGATGTTCTGCAAGGAAACAAGTTGAGAGAAGCAGAACAGATCCAAACATGTTAGTTATCACTTACACTTCAGAACACAATCATCCATGGCCAACACAAAGAAATGCTTTAGCAGGTTCAACAAGATCTCAACCATCCAAAAACAATACTTCAATGAAAAATTCAGAAACTTCTTTGACTCAAAATGACACAACAAAACCAAAAGAAGAACATCAAGAGAATAATAATAATAATAGTGATGGAAATGATTCTCCAATTGTTAACAATGTGAAGGAAGAGAATATGGAAGATATAGAGAAGCTACAAATTGATATGGATGAAGTTGAAGGAGAATTTAGTGATGGACTTTCTTATAAACCTTCTATGATTGAAAATAATCAAAGTCATGAAGATTTTTTTGCTGAGTTAGGTGAAATTGAAACTGATCCATTAAACCTATTGTTTAATCAAGGTTTTGGTGGTAATTCAAGTACTAATGATGTTCATCAAAGGGATAATCAATCCAAGGGTTTAGATCCATTTAATCTCTTTGACTGGTCAGTGGACAACAATAATACCAACAATTCAATGGAAGAACCAAGTAAGAGAAGGTTGCTATGA 1536 0.3398 MCSSIFVSSSSSSSSITSKTMDNYQGDLTDIIRAPGTTTTATTTTAGAYSTSSSEHVLQHVHDNHWHHQHHNQQLFSSSSSSSHHNQQPMSFANSILEGTNMNNNMFGDPLFSSLRDPFLQELDHIPSSSYFNITNNNTTTTTAITTTSPASTSIINVSDVSNVSTSIFALDHNREIRSNSRPCKNIFSNMIQISPNPKLPINYESSSTMAPSPRQIKQVVSTNININANISKDSLLDNTGVQISSSRNSSGLKRRKNQAKKVVCIPAPAAANSRQTGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHPWPTQRNALAGSTRSQPSKNNTSMKNSETSLTQNDTTKPKEEHQENNNNNSDGNDSPIVNNVKEENMEDIEKLQIDMDEVEGEFSDGLSYKPSMIENNQSHEDFFAELGEIETDPLNLLFNQGFGGNSSTNDVHQRDNQSKGLDPFNLFDWSVDNNNTNNSMEEPSKRRLL 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01476 511 MobiDBLite consensus disorder prediction 66 88 - -
Trre3g01476 511 Coils Coil 403 423 - -
Trre3g01476 511 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 26 460 IPR044810 GO:0003700
Trre3g01476 511 FunFam probable WRKY transcription factor 14 256 336 - -
Trre3g01476 511 Pfam WRKY DNA -binding domain 284 341 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre3g01476 511 SUPERFAMILY WRKY DNA-binding domain 280 343 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre3g01476 511 MobiDBLite consensus disorder prediction 71 88 - -
Trre3g01476 511 MobiDBLite consensus disorder prediction 35 54 - -
Trre3g01476 511 ProSiteProfiles WRKY domain profile. 277 343 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre3g01476 511 SMART WRKY_cls 282 342 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre3g01476 511 MobiDBLite consensus disorder prediction 299 400 - -
Trre3g01476 511 Gene3D WRKY domain 256 336 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre3g01476 511 MobiDBLite consensus disorder prediction 326 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01476 Trre-Chr3 11457904 11461135 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01476 21 471 WRKY Transcription Factor Family AT2G34830 41.915 1.77e-88 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre3g01476 WRKY 3e-25 CL0274