Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01467 ATGGGTGCTCCTAAGCAGAAATGGTCAGCAGAAGAGGAAGCGGCGCTGAAGGCTGGAGTTGTCAAGCATGGGGTGGGTAAATGGCGCACAATTCTCAAGGATCCTGAGTTTAATTGTGTCTTATATATTCGCTCAAATGTTGATCTAAAGGATAAATGGAGAAATTTGAGTGTGATGGCAAATGGATGGACTTCTAGGGAGAAGGCTAAGGTATCATTGAGAAGGGCGCATCATCAGGGATCAAGACATGATGACAATCCTATGGCTGTCACTCCTGTTACTCCAAGCGATGATGAAATTGTTGATGTTAAGCCTCTTCAAGTTTCAAGAGATATGATGCAAATTCCGGGTCCAAAAGGGTCTATTGAGAGTTCTGAGATTACTTCTGAGTTTTCCTCCTATGAGTTTTCCACGGATACCGATTTTTGTGGTTCCTCCTCGGAAGTCGAAGATCATTTCAAGATCCTCGAAGATATTCGAGGGTTCAATGTTGCTTCAGCCAACACAGGAGATCCTTTGAGCAGCTTTTTGCGAAATGATGAGGGAAAAACTCCGTTGGATAACCTTATCATGGATGCTATATCTTGCTTGAATGAGCATGGTGGTTCTAATAAAACAACTATTGCTGCTTTCATTGAGGATCAATACTATGCACCGGAAGACTTCAAAAAGATGTTGTCCGCAAAACTGAAGTATCTTACATCTAGGGGAAAACTGATCAAGGTGAAACGTAGGTACAGGATTGCACCTACCCCAGCATATTCAGACAGAGGAAGACGCTCACCCATGTTATCATCGGAAGGGAGGCAGAGAGGCTCTTTTAGATTTGACTTGAGTCGGGTCAGTATACCTACACAGTCTGAGATAGATATAGAGCTAGAAAAGATAAGGTCCATGTCTGCAGAAGAGGCAGCTGCAGTTGCTGCTAGAGCAGTTGCTGCAGCGGAAGCCGCCTTAGCGGAAGCTGAAGAGGCAGTACTGGATGCAGAGGCTGCAGAAGCAGAAGCAGATGCAGCTGAAGCTTTAGCAGAAGCTGCAAGGAAAACTGAGAGGGAGACAAAAGCCCCAAAGACGGTACATCTCGGTTTTTCCTTCCTTCGTAATACTATAACTTAA 1116 0.4453 MGAPKQKWSAEEEAALKAGVVKHGVGKWRTILKDPEFNCVLYIRSNVDLKDKWRNLSVMANGWTSREKAKVSLRRAHHQGSRHDDNPMAVTPVTPSDDEIVDVKPLQVSRDMMQIPGPKGSIESSEITSEFSSYEFSTDTDFCGSSSEVEDHFKILEDIRGFNVASANTGDPLSSFLRNDEGKTPLDNLIMDAISCLNEHGGSNKTTIAAFIEDQYYAPEDFKKMLSAKLKYLTSRGKLIKVKRRYRIAPTPAYSDRGRRSPMLSSEGRQRGSFRFDLSRVSIPTQSEIDIELEKIRSMSAEEAAAVAARAVAAAEAALAEAEEAVLDAEAAEAEADAAEALAEAARKTERETKAPKTVHLGFSFLRNTIT 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01467 371 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Trre3g01467 371 Gene3D - 179 257 IPR036388 -
Trre3g01467 371 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Trre3g01467 371 PANTHER SINGLE MYB HISTONE 4 1 360 IPR044597 GO:0003691
Trre3g01467 371 Pfam linker histone H1 and H5 family 184 243 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre3g01467 371 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 182 250 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre3g01467 371 MobiDBLite consensus disorder prediction 76 96 - -
Trre3g01467 371 FunFam Telomere repeat-binding factor 1 2 58 - -
Trre3g01467 371 SUPERFAMILY "Winged helix" DNA-binding domain 183 259 IPR036390 -
Trre3g01467 371 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Trre3g01467 371 SMART sant 4 59 IPR001005 -
Trre3g01467 371 SUPERFAMILY Homeodomain-like 2 70 IPR009057 -
Trre3g01467 371 Gene3D - 2 59 - -
Trre3g01467 371 SMART h15plus2 180 245 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre3g01467 371 Coils Coil 305 352 - -
Trre3g01467 371 CDD SANT_TRF 6 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01467 Trre-Chr3 11360780 11364682 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01467 186 302 Single Myb Histone (SMH) Gene Family AT1G49950 51.240 1.15e-30 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre3g01467 Linker_histone 1.3e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01467 K09422 - rvl:131307798 269.626