Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01457 ATGATTCCACCATTTACAATATTTCATATCATCATTTTAATTATAATATCTCCCATATCACCTCCACAAGCATATGCAAAACAAAAAGATCCAATCATAGCACAAAATGGTTGTATTTCAGAATGTGGGGGAATTCCAATCCCTTTTCCATTTGGAATGAATGAACCTCATTGTTATGCACACAAGTGGTTTGAAATAGAATGCAAATCAGACAAACCTTACTTGAAGGATTTAAATCTTGAGGTAAAATATTTTGATGAGAGATCAAGCTTAGTTGAAATTATGAATCCAATTTACCGTTCCAATAATTGTCAACATAAAAAAACTAGTAGCAACAATAATAAAACCGTTACCATAAACCTTAGAGACGGTCCTTTTGTATATTCTCAAGGTGACAACACTTTTCTAGCCGTCGGATGTAACAATCTCGCTTTTCTTCAATCAAATGGAACAAGGATTGGTGGTTGTGTATCAATTTGTGACGATGGCAGCGATAACAACAATTTCAATATTAGCAGAGACGGTTGTAATGGAAGGCATTGTTGTAAGACTTCGTTACCTTCACACCTTTCAGAGTTCAATGTAACATTACAAGGTTTAATGAAAGATAGTACTGATCGTTGTAGTTACGCTTTGATTATAAGTAATTATTGGATATCTGATAGTTATTTTATGGATATCTCCAACATTGGGACATTGAATGGGTTGATGAATATAGAATATACTCCGGCAATGCTTGAGTGGGAGATTTTGAATGAGATGTTGATTAATTCAACTTTTAGACTTCCTTTATACTGTCATGACTCTAATACTACATCTTTAAGTAACGAAACCACTGGTCGGCAATGTCAATGCACCCCGGGTTACATCGGTAATCCCTACATTTCTGGAGGCTGCACAGAAAGTTCAGGATTCTACGATAATTATAATCGGTCAAAGAGATGGGCTATTATAGGAGTTTCTTCAAGTCTCGGATCAATCGTTCTCCTCATTGGTCTATGGTTTTTCCATAAATATATGAAGAAAAGAATGATAAAGAAACAAAAAGAAAAATTCTTCAAAAGAAATGGCGGTCTACTGTTAAAACAAAGAATGTCTACGGGAGAAGTAAATGTTGACAGCACTGCTCTTTTCACCTTAAAGGATTTAAAGAAAGCCACTGAAAATTTCAATAAGAACAGAGTTCTTGGAAAAGGAGGCCAAGGTACAGTTTACAAAGGAATGCTAGTAGATGGTAAAATTGTTGCAGTCAAAAAGTTTAAGGTCGAAGGAAATGTTGAAGAGTTCATCAATGAGTTCGTTGTTCTGTCACAAATCAATAACAGAAATGTTGTCAAATTATTAGGATGTTGTTTGGAGACAGAAATTCCATTGCTTGTTTATGAATTCATTCCTAATGGTAATCTTTTCGAGTACTTGCATGACCAAAATGAGGACATCCCGATGACTTGGGACATGCGTTTGAGAATCGCTACTGAAATTGCTGGAGCTTTATTTTACTTGCACTCAATTGCATCTCAACCCATTTATCATAGAGATGTTAAATCAACAAATATACTATTGGACGAAAAGTATAGAGCAAAATTAGCAGATTTTGGAACTTCGAGAATAATTTCAATCGAAGCTACTCATCTTACCACAATGGTTCAAGGTACTTTTGGTTACTTAGACCCTGAATATTTTCATACCAGTCAATTTACCGAGAAAAGTGATGTGTACAGCTTTGGAGTAGTTCTCGCTGAGCTTTTAACTGGTAAGAAAGCAATATCCTCTGTAGGATCCGAGGGATTCCAAAATTTATCTTCCTATTTTATTCAGTGTATAGAGGAGAATATGTTGTTTGACATTGTTGACAAAAGAGTCATACAAGAAGGAGAGAAAGACCATATCACTGCAGTTGCAAATCTTGCATATAGATGCTTAGAGTTGAATGGAAGAAAACGACCAACAATGAAAGAAGTTACATTAGAATTGGAAGGGATTAAGGGATTGAATAAGAAGCTTAATGCACAACAAAACCATGACGAAATTGAGCTTGCAGGAATTGAAGAGTACCAACACTTGGATCGATTTTCTACATCAAATTCATTCCCAATTGTTGACAGTCAAACATACTCCAAAGACTCGGAGGTTATGCATATATGA 2145 0.3524 MIPPFTIFHIIILIIISPISPPQAYAKQKDPIIAQNGCISECGGIPIPFPFGMNEPHCYAHKWFEIECKSDKPYLKDLNLEVKYFDERSSLVEIMNPIYRSNNCQHKKTSSNNNKTVTINLRDGPFVYSQGDNTFLAVGCNNLAFLQSNGTRIGGCVSICDDGSDNNNFNISRDGCNGRHCCKTSLPSHLSEFNVTLQGLMKDSTDRCSYALIISNYWISDSYFMDISNIGTLNGLMNIEYTPAMLEWEILNEMLINSTFRLPLYCHDSNTTSLSNETTGRQCQCTPGYIGNPYISGGCTESSGFYDNYNRSKRWAIIGVSSSLGSIVLLIGLWFFHKYMKKRMIKKQKEKFFKRNGGLLLKQRMSTGEVNVDSTALFTLKDLKKATENFNKNRVLGKGGQGTVYKGMLVDGKIVAVKKFKVEGNVEEFINEFVVLSQINNRNVVKLLGCCLETEIPLLVYEFIPNGNLFEYLHDQNEDIPMTWDMRLRIATEIAGALFYLHSIASQPIYHRDVKSTNILLDEKYRAKLADFGTSRIISIEATHLTTMVQGTFGYLDPEYFHTSQFTEKSDVYSFGVVLAELLTGKKAISSVGSEGFQNLSSYFIQCIEENMLFDIVDKRVIQEGEKDHITAVANLAYRCLELNGRKRPTMKEVTLELEGIKGLNKKLNAQQNHDEIELAGIEEYQHLDRFSTSNSFPIVDSQTYSKDSEVMHI 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01457 714 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 28 669 IPR045274 GO:0007166
Trre3g01457 714 Pfam Wall-associated receptor kinase galacturonan-binding 38 93 IPR025287 GO:0030247
Trre3g01457 714 SUPERFAMILY Protein kinase-like (PK-like) 370 658 IPR011009 -
Trre3g01457 714 Coils Coil 651 671 - -
Trre3g01457 714 CDD STKc_IRAK 396 661 - -
Trre3g01457 714 ProSitePatterns Serine/Threonine protein kinases active-site signature. 509 521 IPR008271 GO:0004672|GO:0006468
Trre3g01457 714 ProSiteProfiles Protein kinase domain profile. 390 661 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g01457 714 CDD EGF_Lam 278 300 IPR002049 -
Trre3g01457 714 Pfam Protein kinase domain 390 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g01457 714 SMART serkin_6 390 661 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g01457 714 FunFam Wall-associated receptor kinase 2 360 463 - -
Trre3g01457 714 Gene3D Transferase(Phosphotransferase) domain 1 464 686 - -
Trre3g01457 714 FunFam Wall-associated receptor kinase 2 464 680 - -
Trre3g01457 714 Gene3D Phosphorylase Kinase; domain 1 357 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01457 Trre-Chr3 11304564 11307929 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01457 32 712 Receptor kinase-like Gene Family AT1G79680 40.784 6.82e-175 517
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Trre3g01457 Pkinase 3.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01457 - - mtr:11415953 1043.88