LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre3g01454	ATGGAAGAAGAGAATAATGAAATTAAATCATTTAAGGATTTGGGCTTATCTGAGAAATTGGTCGATGCTTGTGAGAAATTTGGTTGGAAGAATCCACTAAAGATTCAAACAGAAGTGATTCCCCTTGCACTACAAGGAAAAGATGTCATTGGACTTTCCCAAACGGGTTCTGGTAAGACTGGAGCTTTTGTTCTTCCTATATTGCACGCCTTCTTAGAAGCACCACAACCACACCTAAACAATTTCTTTGCTTGTATAATGTCTCCCACAAGGGAGCTTGCCATTCAAATTGCTGACCAGATTAAAGTTCTAGGTTCTGAAATTGGTGTCAAGTGTGCTGTGCTTGTTGGAGGGACTGACATTGTACAACAATCCATCGAGATAGCAAAGCGACCTCATATTATTGTTGGGACGCCCGGGCGAGTCTTGGATCACCTAAAACAAACCAAAGGATTTTCTCTTGGCAGATTAAAATTCTTGGTCTTAGATGAGGCAGACAGGCTGTTGAATGAGGACTTTGAAACACAACTTAATGAGATTTTAGAATTTATTCCTAGTAAGCGGAGAACATTTCTTTTTTCTGCTACGATGACTAAGAAGGTCCGTAAGATCCAAAGGATGTGCTTAAGAGATCCTGCGAAGGTTGAAGTATCATCCAAATATTCTACTGTGGACACACTGAAGGAGCAGTGTTGCTTTGTGCCAGCAAAACATAAGAATTGCTACCTTGTATACATTCTCATTGAAATGACTGGAAGTACGTCAATGGTATTCACTCGGACTTGTGATTCTTCGCGACTTCTGGCTTCAATTCTTACGAAACTTGGTTTGAAAGCCATCGCAATTAATGGTAATATGAGTCAGTCAAAGAGACTCGAAGCCTTGGAACAGTTCAAGTCTGGGGACTGCAAAATTCTCCTTTGTACCGACGTACTTAGTAGGGGACTGGATATTCCAGAGGTAGATGTGGTGATTAACTACGACATTCCCACGGATCCCAAACTTTATATACATCGTGTGGGAAGGACTGCTCGTGCTGGACGCTCCGGTGTGGCCATTTCTCTTTTGAACCAGTATGAAGTGGGATGGTTCAAAAAGATAGAAGAACTTATGGGAGGTAAGAAGATACCATTCTATCCTGCACAAGAAGAGGAAGTTTTGCTTTTGAAAGAGCGCGTTAGTGAGGCCAAACGATCAGCAGAAAAGGAAATTAAGGAATCCTATGAGAAGAAGAAAAGGAGGGAAGAAGGAGATTTAAGTGAGGATGAGGAGGATACCGACAAGTACTTAGGTCTCTTGTCGTCAAAAAGAAAAACGAAAATGGGCAGCCACGATTATTCTTTCTAA	1347	0.4135	MEEENNEIKSFKDLGLSEKLVDACEKFGWKNPLKIQTEVIPLALQGKDVIGLSQTGSGKTGAFVLPILHAFLEAPQPHLNNFFACIMSPTRELAIQIADQIKVLGSEIGVKCAVLVGGTDIVQQSIEIAKRPHIIVGTPGRVLDHLKQTKGFSLGRLKFLVLDEADRLLNEDFETQLNEILEFIPSKRRTFLFSATMTKKVRKIQRMCLRDPAKVEVSSKYSTVDTLKEQCCFVPAKHKNCYLVYILIEMTGSTSMVFTRTCDSSRLLASILTKLGLKAIAINGNMSQSKRLEALEQFKSGDCKILLCTDVLSRGLDIPEVDVVINYDIPTDPKLYIHRVGRTARAGRSGVAISLLNQYEVGWFKKIEELMGGKKIPFYPAQEEEVLLLKERVSEAKRSAEKEIKESYEKKKRREEGDLSEDEEDTDKYLGLLSSKRKTKMGSHDYSF	448

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre3g01454	448	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	242	387	IPR001650	-
	Trre3g01454	448	Gene3D	-	222	445	IPR027417	-
	Trre3g01454	448	SMART	helicmild6	266	347	IPR001650	-
	Trre3g01454	448	Pfam	Helicase conserved C-terminal domain	242	347	IPR001650	-
	Trre3g01454	448	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	9	37	IPR014014	GO:0003724
	Trre3g01454	448	Pfam	DEAD/DEAH box helicase	34	204	IPR011545	GO:0003676\|GO:0005524
	Trre3g01454	448	Coils	Coil	390	425	-	-
	Trre3g01454	448	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	40	215	IPR014001	-
	Trre3g01454	448	SMART	ultradead3	28	230	IPR014001	-
	Trre3g01454	448	MobiDBLite	consensus disorder prediction	396	419	-	-
	Trre3g01454	448	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	81	368	IPR027417	-
	Trre3g01454	448	MobiDBLite	consensus disorder prediction	426	448	-	-
	Trre3g01454	448	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	161	169	IPR000629	-
	Trre3g01454	448	Gene3D	-	1	221	IPR027417	-
	Trre3g01454	448	CDD	DEADc_DDX47	10	216	IPR044765	GO:0005524
	Trre3g01454	448	PANTHER	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	9	417	-	-
	Trre3g01454	448	CDD	SF2_C_DEAD	227	356	-	-
	Trre3g01454	448	MobiDBLite	consensus disorder prediction	396	448	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre3g01454	Trre-Chr3	11275134	11281645	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre3g01454	8	386	Eukaryotic Initiation Factors Gene Family	AT3G19760	29.504	8.15e-61	202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre3g01454	K14777		-	gmx:100775796	649.432