Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01451 ATGGTAAAGGGTATTTCAAGTTCAGCTCTTCCTTATAAGAGAACACCACCAACTTGGATCAATATCTCTACTCATGATGTTGATGACACCATCTGCAAATTTGCCAAAAAAGGTCTAACTCCATCACAAATTGGTGTTATTCTTCGTGACTCTCATGGAATTTCTCAGGTCAAGAGTATAACTGGAAGCAAGATTTTGCGTATACTTAAGGCTCATGGTCTTGCTCCTGAAATCCTGAAGATTTGTATCACTTGA 255 0.3843 MVKGISSSALPYKRTPPTWINISTHDVDDTICKFAKKGLTPSQIGVILRDSHGISQVKSITGSKILRILKAHGLAPEILKICIT 84
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01451 84 Gene3D - 29 77 - -
Trre3g01451 84 SMART Ribosomal_S13_N_2 1 54 IPR012606 GO:0003735|GO:0005840|GO:0006412
Trre3g01451 84 Pfam Ribosomal S13/S15 N-terminal domain 3 54 IPR012606 GO:0003735|GO:0005840|GO:0006412
Trre3g01451 84 PANTHER RIBOSOMAL PROTEIN S15P/S13E 3 78 IPR023029 -
Trre3g01451 84 FunFam 40S ribosomal protein S13 29 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01451 Trre-Chr3 11249201 11249455 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01451 3 78 Cytoplasmic Ribosomal Protein Gene Family AT4G00100 81.579 1.99e-42 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01451 K02953 - bvg:104886837 142.895