Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01448 ATGTTTCCACAATTTACAATATTTCATATCATCACTTTAATTCTAATATCTCCTTTACTAGGATCAGCACAAGAAGAAAGAACCATAGCACAAGGTTGTAATTCAACATGTGGAAAAGTTTCAATCCCTTTCCCGTTCGGAATGAAAGAACCTCATTGTTATGCACACAAATGGTTCGAAATAGAATGCAAATTAAACAAAACTTCTCATATTCATAAACCTTACTTGAAGTATTTAAATCTTGAGGTAAGAGAGTTTGACAATGACAAAGGTATGGTTGAGATTATGAATCCAATTTACCATTCCAACTGTAAAGAAAACAAAAACAATAAAACTGCTGTGATAAACCTTAGAGACAGTCCTTTCGTATATTCACAGGATGTTAACACATTTTTAGCAGTTGGATGTAACAAACTTGCTTTTCTTGACTCAAATGGGACAACGGTTGGTGGTTGTGTATCAATTTGTGATGACAACAACAACAATTTTAGCAATTTCAATTTCGATTTCAATTTCCGTAGCAACAGTTGTAATGGAAAGTATTGTTGCGAGACTTCATTGCCTTTGCATCTTTCAGAGTTTAACACAACGTTTCGAGGTTTAAGGGAACAGAATAGTGACAACTGTAGCTATGCCTTGATTGTAAGTAAATCTTGGGTATTTTCAAGTGGATCTTATAGACCTTTTCATGAGATTTCATATTATGACAATCCTTATTATTATGAGAGTCCTTATTATTATGAGTCATATATGAGAAGTTATTTGGTTAAGAAATTGAATAAGTTGAAGAATATGGAGTATGCTCCAGCAGTGCTGGAGTGGGAGATTTTGAATGATATGTTAATCAATTCGACATTTCAACTTCCAAAAAAATCAAATTGCTATCATTCCAATGTTACATCTTTAAGTAACAGAACCACTGGTCGGAAATGTGAATGCTCCGAGGGTTATGGAGGCAATCCCTATGTTGCTGGAGGCTGTACAGAATCAACAAAGTACTCACGTTCCTACAGTGAGAATAATAATCGGTGGAAGAAGTGGGTTATTGTAGGAATTTCGTCAAGTCTTGGATCCATCGGTTTCCTCATTGGTCTATGGTATTTGTATAAAGATGTGAAGAAAAGAATAATAAAGAAATACAGAGAAAAATTCTTCAAAAGAAATGGTGGTTTGTTATTACAAAAAAGAATGTCTTCGGGAGAAGTAAATGTTGAAAGAACTACTCTCTTCGCCTTAAAGGATTTAAAGAAAGCCACTGAAAACTTCAATAAGAACAGAGTTCTTGGAAAAGGAGGCCAAGGTACAGTTTACAAAGGCATGCTGGTAGATGGTAAAATTGTTGCAGTGAAAAAGTTTAAGGTTGAAGGAAAGGTTGAAGAGTTCATCAATGAGTTTGTTATTCTTTCACAAATCAACAATAGAAATGTGGTCAAATTATTAGGATGTTGTTTGGAGACAGAAATTCCATTGCTAGTTTATGAATTCATTCCTAATGGTAATCTTTTTGAGTACTTGCATGACCAAAATGAGGACATACCAATGACATGGGACATTCGTCTGAGAATTGCAACTGAAATTGCTGGAGCTTTATTTTACTTGCACTCAACTGCATGTCAACCCATTTATCATAGAGACATTAAATCAACAAATATAATGTTGGACGAAAAGTATAGGGCAAAGTTGGCAGATTTTGGAGCATCAAGAATAATTTCAATCGAAGCTACTCACCTTACCACAATGGTTCAAGGTACTTTTGGTTACTTAGACCCTGAATATTTTCATACCAGTCAATTTACAGAGAAAAGTGACGTGTATAGCTTTGGAGTAGTTCTTGCTGAACTTTTAACTCGTAAGAAGCCAATATCCTCTATAGGATCTGGGGAATACCAAAATTTGGCTTCCTATTTTGTTCAGTGTATAGAGGAAAATATTTTGTATGACATTGTTGATGAAAGGGTCACAAAAGAAGGGGAGAAAGAACATGTCATCGCAGTTGCAAATCTTGCATACAGATGCTTAGAGTTGAATGGAAGAAAGCGACCAACTATGAAAGAAGTCATGTTACAGTTGGAAGGCATCAGAGGAATGAATAAGAAACTTAATGCCCAACAAAACCGTGAGGAAATTGAGCTTGCTGGAATTGAAGAGTACCGAACTTGGGATGGGTATTCTGCATCAAATTTATTGCCAACTATTGACAGTCAAACATACTCCACAGACTCAGAGGTTATGCATATTTTGCATTAG 2247 0.3525 MFPQFTIFHIITLILISPLLGSAQEERTIAQGCNSTCGKVSIPFPFGMKEPHCYAHKWFEIECKLNKTSHIHKPYLKYLNLEVREFDNDKGMVEIMNPIYHSNCKENKNNKTAVINLRDSPFVYSQDVNTFLAVGCNKLAFLDSNGTTVGGCVSICDDNNNNFSNFNFDFNFRSNSCNGKYCCETSLPLHLSEFNTTFRGLREQNSDNCSYALIVSKSWVFSSGSYRPFHEISYYDNPYYYESPYYYESYMRSYLVKKLNKLKNMEYAPAVLEWEILNDMLINSTFQLPKKSNCYHSNVTSLSNRTTGRKCECSEGYGGNPYVAGGCTESTKYSRSYSENNNRWKKWVIVGISSSLGSIGFLIGLWYLYKDVKKRIIKKYREKFFKRNGGLLLQKRMSSGEVNVERTTLFALKDLKKATENFNKNRVLGKGGQGTVYKGMLVDGKIVAVKKFKVEGKVEEFINEFVILSQINNRNVVKLLGCCLETEIPLLVYEFIPNGNLFEYLHDQNEDIPMTWDIRLRIATEIAGALFYLHSTACQPIYHRDIKSTNIMLDEKYRAKLADFGASRIISIEATHLTTMVQGTFGYLDPEYFHTSQFTEKSDVYSFGVVLAELLTRKKPISSIGSGEYQNLASYFVQCIEENILYDIVDERVTKEGEKEHVIAVANLAYRCLELNGRKRPTMKEVMLQLEGIRGMNKKLNAQQNREEIELAGIEEYRTWDGYSASNLLPTIDSQTYSTDSEVMHILH 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01448 748 ProSitePatterns Serine/Threonine protein kinases active-site signature. 541 553 IPR008271 GO:0004672|GO:0006468
Trre3g01448 748 CDD EGF_Lam 306 328 IPR002049 -
Trre3g01448 748 ProSiteProfiles Protein kinase domain profile. 422 693 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g01448 748 Pfam Protein kinase domain 422 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g01448 748 SMART serkin_6 422 693 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g01448 748 FunFam Wall-associated receptor kinase 2 496 712 - -
Trre3g01448 748 FunFam Wall-associated receptor kinase 2 392 495 - -
Trre3g01448 748 Pfam Wall-associated receptor kinase galacturonan-binding 33 92 IPR025287 GO:0030247
Trre3g01448 748 Gene3D Transferase(Phosphotransferase) domain 1 496 717 - -
Trre3g01448 748 SUPERFAMILY Protein kinase-like (PK-like) 408 691 IPR011009 -
Trre3g01448 748 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 28 701 IPR045274 GO:0007166
Trre3g01448 748 Gene3D Phosphorylase Kinase; domain 1 390 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01448 Trre-Chr3 11231823 11234785 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01448 28 708 Receptor kinase-like Gene Family AT1G79680 41.769 4.56e-176 521
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Trre3g01448 Pkinase 1.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01448 - - mtr:11415953 1077.39