Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01447 ATGCTTCCACAGTTTAAAATATTTCATATCATCATTTTAATTCTAATATCTCCTCCACTAGCATATTCCCAACAAGAAGAACATGGAATCATAGCACAACAAGGTTGTAATTCAACATGTGGAACAGTTTCAATCCCTTTTCCATTCGGAATGAATGAACCTCATTGCTATGCACACAAATGGTTCGAAATAGAGTGCAAAGTCGACAACATTTCTAGAGGTCCAACACCTTACTTGAAGTCTTTAAAGCTTGAGGTAAATAATTTTTACTCAGGCATGGTTGAGATTATGAATCCAATTTACCGTTCTAATTGCCGAAAAAACAAAAGTAGTAACAAGAGTAATAAAACTGTTATAAACCTTAGAGACAGTCCTTTCATATATTCCCAGAATGAGAACACATTTTTGGCAGTTGGATGTAACAAACTTGCTTTTCTTCAATCAAAGGGAACAACTGTTGGTGGTTGTGTATCAATTTGTGATGAAAAGATCAACAGTTTTAGCAATTTTAATTCCGAAAGCGACAGTTGTAATGGAGAGTATTGTTGTGAGACTTCATTGCCTTTGCATCTTTCAGAGTATAACACAACATTTCGAGGTTTAAGTGAACAAAATAGTGACGACTGTAGCTATGCTTTGATTGTAAGGAAAGATTGGGTATCTTTAAGTAAGTCTTATAGTAGTGATTATTATTCGTCGTATAAGTATGCTTATTGGATGGAGAAATTGAATGAGTTGCAGTATATGGAGTATGCTCCAGCAGTACTTGAGTGGGAGATTTTGAATGATATGTTAATCAATTCCACATTTCAACTTCCTTCAAAATTTTGCCATGACAGTAAGGTTACATCTTTAAGTAACAGAACCACCGGCAAGACATGTGATTGCTCCTATGGTTACAGAGACAATCCTTACAGAGGCAATCCCTACGTTGCTGGAGGCTGCACAGAAATTCCAGAATTCTACAATAACACAAAGAATAATCGGTGGAAGAAGTGGGTTATTGTAGGAATTTCATTGAGTCTTGGATCCATCGGTTTCCTCATTGGTCTATGGTTTTTGTATAAAGATGTGAAGAAAAGAATAATAAAGAAACGAAGACAAAAATTCTTCAAAAGAAATGGTGGTTTGTTGTTACAAAAACGAATGTCCTCTGGAGAAGTAAATGTTGATAGAACTGCTCTCTTCACCTTAACGGATTTAAAGAAAGCTACCGAAAACTTCAATAAGAACAGAGTTCTTGGAAAAGGAGGCCAAGGTACAGTTTACAAAGGTATGCTAGTAGATGGTAAAATTGTTGCAGTGAAAAAGTTTAAGGTTGAAGGAAAGGTTGAGGAATTCATCAATGAGTTTGTTATTCTTTCACAAATCAATAACAGAAATGTTGTCAAATTATTAGGATGTTGTTTGGAGACAGAAATTCCCTTGCTTGTTTATGAATTCATTCCTAATGGTAATCTTTTCGAGTACTTGCATGACCAAAATGAAGACATACCGATGACATGGGACATACGTTTGAGAATTGCAACTGAAATTGCTGGAGCTTTATTTTACTTGCACTCAACTGCATGTCAACCCATTTACCATAGAGACATTAAATCAACAAATATAATGTTGGACGAAAAGTATAGGGCAAAATTGGCAGATTTTGGAGCATCAAGAATAATTTCAATCGATGCTACTCACCTTACCACAATTGTTCAAGGTACTTTTGGTTACTTAGACCCTGAATATTTTCATACCAGTCAATTTACAGAGAAAAGTGACGTGTATAGCTTTGGAGTAGTTCTTGCTGAACTTTTAACTGGTAAGAAGCCAATATCCTCTATAGGATCTGGGGAATACCAAAATTTGGGTTCCTATTTTGTTCAGTGTATAGAGGAGAATATTTTGTTTGGCATTGTCGACGAAAGGGTCACAAAAGAAGGCGAAAAAGAACATGTCATTGCAGTTGCAAATCTTGCATATAGATGCTTAGAGTTGAATGGAAGAAAGCGGCCAACTATGAAAGAAGTCATGTTACAATTAGAAGCGATCAGGGGAATGAATAAGAAGCTTAATGCACAACAAAACCGTGAGGAAATTGAGCTTGCTGGAATTGAAGAGTACCAACCATGGGATGGGTATTCTGCATCAAATTCATTGCCAACTATTGACAGTCAAACATACTCCACGGACTCGGAGGTTATGCATATTATTACATTAAAGTAG 2211 0.3596 MLPQFKIFHIIILILISPPLAYSQQEEHGIIAQQGCNSTCGTVSIPFPFGMNEPHCYAHKWFEIECKVDNISRGPTPYLKSLKLEVNNFYSGMVEIMNPIYRSNCRKNKSSNKSNKTVINLRDSPFIYSQNENTFLAVGCNKLAFLQSKGTTVGGCVSICDEKINSFSNFNSESDSCNGEYCCETSLPLHLSEYNTTFRGLSEQNSDDCSYALIVRKDWVSLSKSYSSDYYSSYKYAYWMEKLNELQYMEYAPAVLEWEILNDMLINSTFQLPSKFCHDSKVTSLSNRTTGKTCDCSYGYRDNPYRGNPYVAGGCTEIPEFYNNTKNNRWKKWVIVGISLSLGSIGFLIGLWFLYKDVKKRIIKKRRQKFFKRNGGLLLQKRMSSGEVNVDRTALFTLTDLKKATENFNKNRVLGKGGQGTVYKGMLVDGKIVAVKKFKVEGKVEEFINEFVILSQINNRNVVKLLGCCLETEIPLLVYEFIPNGNLFEYLHDQNEDIPMTWDIRLRIATEIAGALFYLHSTACQPIYHRDIKSTNIMLDEKYRAKLADFGASRIISIDATHLTTIVQGTFGYLDPEYFHTSQFTEKSDVYSFGVVLAELLTGKKPISSIGSGEYQNLGSYFVQCIEENILFGIVDERVTKEGEKEHVIAVANLAYRCLELNGRKRPTMKEVMLQLEAIRGMNKKLNAQQNREEIELAGIEEYQPWDGYSASNSLPTIDSQTYSTDSEVMHIITLK 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01447 736 Gene3D Transferase(Phosphotransferase) domain 1 482 703 - -
Trre3g01447 736 ProSiteProfiles Protein kinase domain profile. 408 679 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g01447 736 ProSitePatterns Serine/Threonine protein kinases active-site signature. 527 539 IPR008271 GO:0004672|GO:0006468
Trre3g01447 736 FunFam Wall-associated receptor kinase 2 482 698 - -
Trre3g01447 736 SMART serkin_6 408 679 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g01447 736 Gene3D Phosphorylase Kinase; domain 1 379 481 - -
Trre3g01447 736 SUPERFAMILY Protein kinase-like (PK-like) 393 674 IPR011009 -
Trre3g01447 736 Coils Coil 669 689 - -
Trre3g01447 736 Pfam Wall-associated receptor kinase galacturonan-binding 36 86 IPR025287 GO:0030247
Trre3g01447 736 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 30 687 IPR045274 GO:0007166
Trre3g01447 736 FunFam Wall-associated receptor kinase 2 378 481 - -
Trre3g01447 736 Pfam Protein kinase domain 408 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01447 Trre-Chr3 11225825 11228442 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01447 31 730 Receptor kinase-like Gene Family AT1G16260 43.075 2.38e-179 528
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Trre3g01447 Pkinase 2.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01447 - - mtr:11415953 1045.03