Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01446 ATGATTCCACCATTTACAATATTTCATATCATAATTTTAATTATAATATCTCCCATATCACCTCCACAAGCATATGCACAACTAGCAGATGTAATCATAGCACAAGATGGTTGTAATTCAACATGTGGAGAAATTTCAATCCCTTTTCCATTTGGAATGAATGAACCTTATTGCTATGCACACAAATGGTTTGAAATAGAATGCAAATCAAACAAACCTTACTTGAAGTATTTAAATCTTGAGGTAAAAGATTTTGATGTGAGCTCAAGCTTAGTTCAAATTATGAATCCAATTTACCGTTCTAATTGTCCACATAAAAAAACTAGTAGCAACAATAATAAAACCGTTACCATAAACCTTAGAGACGGTCCTTTCGTATATTCTCAAGATAACAACGCATTTCTAGCCGTTGGATGTAACAATCTTGCTTTTCTTCAATCAAATGGAACAAAGATTGGTGGTTGTGTATCAATTTGTGATGACGACAACAATAACAACAATTTCAACAATTTCAATATTGGCAGCGACGTTTGTAATGGAAGGTATTGTTGTAAGACTTTGTTACCTTCGCACCTTTCAGAGTTCAATGTAACATTACAAGGTTTAAGGAAAGATAGTAGTGATGGTTGTAGTTACGCTTTGATTGTAAGTAATGGTTGGATATCTCTCGATAGTTCTTTTATGGATATCTCCGAGATTGAGACATTGAATGAGTTGAAGAATATGGAATATACTCCGGCATGGCTTGAGTGGGAGATTTTGAATGAGATGTTGATTAATTCAACTTTTAAACTTCCTTCAGATATTTGTTATGACTCTAATATTACATCTTTAAGTAACCGAACCACTGGTCAGCAATGTCTATGCCCCTGGGATTTCACCGGTAATCCCTACATTTCTGGAGGCTGCACAGGATTGTACGATAATAAATATAATCGGTCAAAGAAGTGGGCTATTATAGGAGTTTCTTCAAGTCTCGGATCAATCGGTCTCCTCATTGGTCTATGGTTTTTGCGTAAAGATATGAAGAAAAGAATGATAAAGAAACGAAAAGAAAAATTCTTCAAAAGAAATGGCGGTTTACTGTTAAAACAAAGAATGTCTTCAGGAGAAGTAAATGTTGACAGAACTGCTCTCTTCACCTTAAAGGATTTAAAGAAAGCCACCGAAAATTTCAATAAGAACAGAGTTCTTGGAAAAGGAGGCCAAGGTACAGTTTACAAAGGCATGCTAGTAGATGGTAAAATTGTTGCAGTGAAAAAGTTTAAGGTCGAAGGAAAGATTGAAGAGTTCATCAATGAGTTTGTTGTTCTGTCACAAATCAATAATAGAAATGTTGTTAAATTACTAGGATGTTGTTTGGAGACAGAAATTCCATTGCTTGTTTATGAATTCATTCCTAATGGTAATCTTTTCGAGTACTTGCATGACCAAAATGAGGACATCCCGATGACTTGGGACATGCGTTTGAGAATCGCTACTGAAATTGCTGGAGCTTTATTCTACCTACATTCAATTGCATCTCAACCCATTTATCATAGAGACGTCAAATCAACAAATATACTACTGGACGAAAAGTATAGAGCAAAATTAGCAGATTTTGGAACATCGAGAATAATTTCAATCGAAGCTACTCATCTTACCACAGTGGTTCAAGGTACTTTTGGTTACTTAGATCCTGAATATTTTCATACCAGTCAATTTACCGAGAAAAGTGATGTGTACAGCTTTGGAGTAGTTCTCGCTGAACTTTTAACTGGGAAGAAGCCAATATCCTCTGTAGGATCTGAGGAATGCCAAAGTTTAGCTTCCTATTTTGTCCAGTGTATAGAGGAAAATATGTTGTTTGATATTATTGACAAAAGGGTCATAAAAGAAGGAGAGAAAGAACATATCACTGCGGTTGCAAATCTTGCATATAGATGCGTAGAGTTGAATGGAAGAAAACGACCAACAATGAAAGAAGTTATCTTAGAATTGGAAGGGATCAGGAGATTGAATAAGAAGCTTAATGCACAACAAAACCATGAAGAAATTGAGCTTGCAGGAATTGAAGAGTACCAGCATTGGGATGGATTTTCTGCATCAAATTCATTACCAATTGTTGACGGTCAAACATACTCCACAGATTCAGAAGTTATGCATATTATTGCATTAGAGTAG 2163 0.3532 MIPPFTIFHIIILIIISPISPPQAYAQLADVIIAQDGCNSTCGEISIPFPFGMNEPYCYAHKWFEIECKSNKPYLKYLNLEVKDFDVSSSLVQIMNPIYRSNCPHKKTSSNNNKTVTINLRDGPFVYSQDNNAFLAVGCNNLAFLQSNGTKIGGCVSICDDDNNNNNFNNFNIGSDVCNGRYCCKTLLPSHLSEFNVTLQGLRKDSSDGCSYALIVSNGWISLDSSFMDISEIETLNELKNMEYTPAWLEWEILNEMLINSTFKLPSDICYDSNITSLSNRTTGQQCLCPWDFTGNPYISGGCTGLYDNKYNRSKKWAIIGVSSSLGSIGLLIGLWFLRKDMKKRMIKKRKEKFFKRNGGLLLKQRMSSGEVNVDRTALFTLKDLKKATENFNKNRVLGKGGQGTVYKGMLVDGKIVAVKKFKVEGKIEEFINEFVVLSQINNRNVVKLLGCCLETEIPLLVYEFIPNGNLFEYLHDQNEDIPMTWDMRLRIATEIAGALFYLHSIASQPIYHRDVKSTNILLDEKYRAKLADFGTSRIISIEATHLTTVVQGTFGYLDPEYFHTSQFTEKSDVYSFGVVLAELLTGKKPISSVGSEECQSLASYFVQCIEENMLFDIIDKRVIKEGEKEHITAVANLAYRCVELNGRKRPTMKEVILELEGIRRLNKKLNAQQNHEEIELAGIEEYQHWDGFSASNSLPIVDGQTYSTDSEVMHIIALE 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01446 720 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 34 671 IPR045274 GO:0007166
Trre3g01446 720 SMART serkin_6 392 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g01446 720 Gene3D Phosphorylase Kinase; domain 1 360 465 - -
Trre3g01446 720 SUPERFAMILY Protein kinase-like (PK-like) 377 662 IPR011009 -
Trre3g01446 720 Pfam Wall-associated receptor kinase galacturonan-binding 38 94 IPR025287 GO:0030247
Trre3g01446 720 FunFam Wall-associated receptor kinase 2 466 682 - -
Trre3g01446 720 ProSitePatterns Serine/Threonine protein kinases active-site signature. 511 523 IPR008271 GO:0004672|GO:0006468
Trre3g01446 720 Coils Coil 653 673 - -
Trre3g01446 720 Gene3D Transferase(Phosphotransferase) domain 1 466 688 - -
Trre3g01446 720 ProSiteProfiles Protein kinase domain profile. 392 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g01446 720 CDD STKc_IRAK 398 663 - -
Trre3g01446 720 FunFam Wall-associated receptor kinase 2 362 465 - -
Trre3g01446 720 Pfam Protein kinase domain 392 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01446 Trre-Chr3 11220990 11224333 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01446 25 714 Receptor kinase-like Gene Family AT1G16260 42.149 0.0 531
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Trre3g01446 Pkinase 5.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01446 - - mtr:11415953 1066.99