Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01445 ATGATTCCACAATTATTCACAATATTTCATATCATCATTTTAATTATAATATCTCCCATATCACCTCCACAAGCATATGCACAAAATGGTTGTAATTCAACATGTGGAGAAATTTCAATCCCTTTTCCATTTGGAATGAATGAACCTCATTGTTATGCACACAAGTGGTTTGAAATAGAATGCAAATCAAACAAACCTTACTTGAAGTCTTTAAATCTTGAGGTAAAAGATTTTGATGTGAGCTCAAGCTTCGTTCAAATTATGAATCCAATTTACCGTTCCAATAATTGTCAACATAACAAAACTAGTAGCAACAATAATAAAACCGTTACCATAGACCTTAGAGACACTCCTTTTGTATATTCTCAAGATGACAACACTTTTCTAGCCGTTGGATGTAACAATCTTGCTTTTCTTCAATCAAATGGAGCAAAGATTGGTGGTTGTGTATCAATTTGTGATGACAAAAACAATAACAATTTCAATATTGATAGCGACGGTTGTAATGGAAGATATTGTTGTAAGACTTCGTTACCTTCGCACCTTTCCGAGTTCAATGCAACATTAGAAGGTTTAAGGAAAGATAGTAGTGATGGATGTAGTTATGCTTTGATTGCAAGTCGTTATTGGGCATCTCTTCAAAGTTCTTATCTGGATTATTTGGAGATTGAGAGATTGAATGAGTTGAAGAATATGGAGTATGCTCCTGCATTCCTTGAATGGGAAATTTTGAATGATATGTTGATTAATTCAACATTTCAACTTCCTTCAGATTCAAATTGTTATGACTCTAATGTTACATCTTTAAGTAACCGAACCACTGGTCGGAAATGTCGATGCTTTTTGGGTTACAATGGTAATCCTTACGTTTCTGGAGGCTGCACAGAAACTCCAGGATTCTTCCATAAGAATAATCGGTCAAAGAAGTGGGCTATTGTAGGAGTTTCATCAAGTCTCGGATCAATCGGTTTGCTCATTGGTCTATGGTTTTTGTACAAAGATATGAAGAAAAGAATGATAAAGAAACGAAAAGAAAAATTCTTCAAAAGAAATGGTGGTTTACTGTTAAAACAAAGAATGTCTTCAGGAGAAGTAAATGTTGACAGAACTGCTCTCTTCACCTTAAAGGATTTAAAGAAAGCCACCGAAAATTTCAATAAGAACAGAGTTCTTGGAAAAGGAGGCCAAGGTACAGTTTACAAAGGCATGCTAGTAGATGGTAAAATTGTTGCAGTGAAAAAGTTTAAGGTCGAAGGAAAGATTGAAGAGTTCATCAATGAGTTTGTTGTTCTGTCACAAATCAATAACAGAAATGTTGTCAAATTATTAGGATGTTGTTTGGAGACAGAAATTCCATTGCTTGTTTATGAATTCATTCCTAATGGTAATCTTTTCGAGTACTTGCATGACCAAAATGAGGACATCCCGATGACTTGGGACATGCGTTTAAGAATCGCAACTGAAATTGCTGGAGCTTTATTTTACCTACATTCAATTGCATCTCAACCGATTTATCATAGAGACGTCAAATCAACAAATATACTATTGGATGAAAAGTATAGAGCGAAATTAGCAGATTTTGGAACATCGAGAATAATTTCAATCGAAGCTACTCATCTTACCACAATGGTTCAAGGTACTTTTGGTTACTTAGACCCTGAATATTTTCATACCAGTCAATTTACTGAGAAAAGTGATGTGTACAGCTTTGGAGTAGTTCTCGCTGAACTTTTAACTGGTAAGAAGCCAATATCCTCTGTAGGATCGGGAGAATTCCAAAATTTAGCTTCCTATTTTATTCAGTGTATAGAGGAGAATATGTTGTTTGGCATTGTTGACAAAAGGGTCATACAAGAAGGGGAGAAAGAACATGTCACTGCAGTTGCAAATCTTGCATACAGATGTTTAGAGTTGAATGGAAGAAAACGACCAACAATGAAAGAAGTTACATTAGAATTGGAAGGGATTAGGGGATTGAATAAGAAGCTTAATGCACAACAAAACCATGAAGAAATTGAGCTTGCAGGAATTGAAGAGTACCAACATTGGGATGGATTTTCTGCATCAAATTCATTCCCAATTGTTGACAGCCAAACATACTCCACAGACTCAGAGGTTATGCATATTATTGCATTAGAGTAG 2142 0.352 MIPQLFTIFHIIILIIISPISPPQAYAQNGCNSTCGEISIPFPFGMNEPHCYAHKWFEIECKSNKPYLKSLNLEVKDFDVSSSFVQIMNPIYRSNNCQHNKTSSNNNKTVTIDLRDTPFVYSQDDNTFLAVGCNNLAFLQSNGAKIGGCVSICDDKNNNNFNIDSDGCNGRYCCKTSLPSHLSEFNATLEGLRKDSSDGCSYALIASRYWASLQSSYLDYLEIERLNELKNMEYAPAFLEWEILNDMLINSTFQLPSDSNCYDSNVTSLSNRTTGRKCRCFLGYNGNPYVSGGCTETPGFFHKNNRSKKWAIVGVSSSLGSIGLLIGLWFLYKDMKKRMIKKRKEKFFKRNGGLLLKQRMSSGEVNVDRTALFTLKDLKKATENFNKNRVLGKGGQGTVYKGMLVDGKIVAVKKFKVEGKIEEFINEFVVLSQINNRNVVKLLGCCLETEIPLLVYEFIPNGNLFEYLHDQNEDIPMTWDMRLRIATEIAGALFYLHSIASQPIYHRDVKSTNILLDEKYRAKLADFGTSRIISIEATHLTTMVQGTFGYLDPEYFHTSQFTEKSDVYSFGVVLAELLTGKKPISSVGSGEFQNLASYFIQCIEENMLFGIVDKRVIQEGEKEHVTAVANLAYRCLELNGRKRPTMKEVTLELEGIRGLNKKLNAQQNHEEIELAGIEEYQHWDGFSASNSFPIVDSQTYSTDSEVMHIIALE 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01445 713 Pfam Wall-associated receptor kinase galacturonan-binding 31 87 IPR025287 GO:0030247
Trre3g01445 713 ProSiteProfiles Protein kinase domain profile. 385 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g01445 713 ProSitePatterns Serine/Threonine protein kinases active-site signature. 504 516 IPR008271 GO:0004672|GO:0006468
Trre3g01445 713 SUPERFAMILY Protein kinase-like (PK-like) 370 651 IPR011009 -
Trre3g01445 713 Gene3D Transferase(Phosphotransferase) domain 1 459 681 - -
Trre3g01445 713 Gene3D Phosphorylase Kinase; domain 1 353 458 - -
Trre3g01445 713 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 23 665 IPR045274 GO:0007166
Trre3g01445 713 Pfam Protein kinase domain 385 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g01445 713 Coils Coil 646 666 - -
Trre3g01445 713 FunFam Wall-associated receptor kinase 2 355 458 - -
Trre3g01445 713 FunFam Wall-associated receptor kinase 2 459 675 - -
Trre3g01445 713 CDD STKc_IRAK 391 656 - -
Trre3g01445 713 SMART serkin_6 385 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01445 Trre-Chr3 11215608 11218668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01445 2 657 Receptor kinase-like Gene Family AT1G16130 43.410 0.0 534
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Trre3g01445 Pkinase 2.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01445 - - mtr:11415953 1094.34