Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01432 ATGGATTTTTCAATTGGAGGCGCTCACAAATCCCATGATGATGACATTAATAACGATGAAAGAAGATCTTCTAACAATCGTCTTACGTATACTCAATCAGCGAAACTTGAAAATTTCATGAAAGAATGCGGTCATCCAGATGAAGCCCAAAGACGACAATTGGCTGAGGAGCTTGAGCTTCAGCCGAAGCAAGTCAAATATTGGTTCTCAAATAAGAGAACATTGTTGAAGAATCAATACAATAAACAAAATAACAATAATCTCCGTTTGGAGAATGAAAGGCTTCAAAATGAGAACTTACTAATGAAAGAAGCATTGAAGACTATAAAGTGTGAGCCGTGTGGGGGTCCCCCATTTCCGGTGGAAGAGCATAAACATTTCAAACACAACATGCAACAAGTAAATGCTGAGATTAAACAAAAGTGTGAGAAAATCTCCAGATTTCTTACAAGTTTTACGGAGAGAAAAATATCTCAACCTATATCTCTAAGTCATGTTCATGGTCCAATATCAATACAAAATTATGAAGAAGAACGGGGAATGGTGTCTCAACTTGCAATTCTTGCTATGCAAGAATTAATTAGGCTTGTTGCGTATTCGGGAATAGTTGGGCTTGATGGCTTGCAATTGGTTGAAAAGTTTCTCGACTCGAAAAAATGGACAAATTTGTTCCCAATTGTTACTAAAGCGGAAACTACCAAAGTGCTTGAAACCGGCTCCCCAGAAAATCGAGAAGAAGCTTTGTTGTTGATGAAAGAAGAAATGCATATTTTATCACCTCTAGTGCGGCCTCGCGAATTTAACATAATTCGATATTGCAAACAAGTTGATCCTGGCGTATGGGTGATAATAACTGGTGTATCATTTGATTCTTCTCGACCTAACACACTACCTAAGTCCCACTCTTGGAAACATCCTTCTGGATGTATGATTCGTGAAATGCCTAACAAGTCTTGTCTGTGGGATGTTATGGCATGTGGAAATCCAATGGATGAGGTTGGCCACATTTCACATGGACTCTATCCTGGCAACTGTACTTCAATTTTTCAGACACACAGTGAGAACTATGCAATGATTTTACAAGAAAGTTTCACATCTCCTGTGGGATCATATGTTATATATGCTCCAGTAGATACATCATCTATGAGTGCAGCCTTAGAGGGTGGAGACTCAAAAAACATACAAATTCTTCCAAGTGGATTTGTTGTGTGTTCATATACACATCCAAATGCAACTTTTGAAGCATTTAACAACATTGGAAGTAGTAGTAGTAGTAGTAGTGGTGGTGTTGGAAGAGTAGGAGCTGGCACATTGTTAACTTTGGCCTATCAAATTTTGACATGTAGTCCAAATGGAATTGATCAACACCAAAACATGGAAGCTGTTGCTACTATCAACACTCTTTTGTCCACTAGTGTTCTAAAAGTAAGGGGTGCTCTCATGAACTCTAACAATTTGGAGTAG 1464 0.3839 MDFSIGGAHKSHDDDINNDERRSSNNRLTYTQSAKLENFMKECGHPDEAQRRQLAEELELQPKQVKYWFSNKRTLLKNQYNKQNNNNLRLENERLQNENLLMKEALKTIKCEPCGGPPFPVEEHKHFKHNMQQVNAEIKQKCEKISRFLTSFTERKISQPISLSHVHGPISIQNYEEERGMVSQLAILAMQELIRLVAYSGIVGLDGLQLVEKFLDSKKWTNLFPIVTKAETTKVLETGSPENREEALLLMKEEMHILSPLVRPREFNIIRYCKQVDPGVWVIITGVSFDSSRPNTLPKSHSWKHPSGCMIREMPNKSCLWDVMACGNPMDEVGHISHGLYPGNCTSIFQTHSENYAMILQESFTSPVGSYVIYAPVDTSSMSAALEGGDSKNIQILPSGFVVCSYTHPNATFEAFNNIGSSSSSSSGGVGRVGAGTLLTLAYQILTCSPNGIDQHQNMEAVATINTLLSTSVLKVRGALMNSNNLE 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01432 487 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 21 198 IPR042160 -
Trre3g01432 487 MobiDBLite consensus disorder prediction 1 22 - -
Trre3g01432 487 Pfam START domain 193 324 IPR002913 GO:0008289
Trre3g01432 487 MobiDBLite consensus disorder prediction 1 27 - -
Trre3g01432 487 SUPERFAMILY Bet v1-like 196 329 - -
Trre3g01432 487 ProSiteProfiles START domain profile. 201 319 IPR002913 GO:0008289
Trre3g01432 487 CDD homeodomain 27 73 IPR001356 GO:0003677
Trre3g01432 487 Pfam Homeodomain 26 77 IPR001356 GO:0003677
Trre3g01432 487 SUPERFAMILY Homeodomain-like 15 85 IPR009057 -
Trre3g01432 487 SMART HOX_1 21 83 IPR001356 GO:0003677
Trre3g01432 487 Gene3D - 5 78 - -
Trre3g01432 487 ProSiteProfiles 'Homeobox' domain profile. 19 79 IPR001356 GO:0003677
Trre3g01432 487 Coils Coil 73 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01432 Trre-Chr3 11095644 11100850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01432 321 480 Homeobox Transcription Factor Family AT1G73360 37.278 9.68e-23 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre3g01432 START 1.9e-16 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01432 K09338 - rcu:8266520 237.269