Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01427 ATGGAATTTTCGTTGATGACCGTGTTAAACATTGAACAAAGAGACCAAAACCTTCGTCCAACAGATAGGATATCTAGTCTGGAAGAAATATTTCAAACGCTTCAAAGACCAGATCGCAAGCAGAGACGGGAAATTGCCAAAAAGCTTGACCTTGACAGATACCAAGTGAAGAATTGGTTTCAATACAAAAGAAGAAAGGTTAAGAATGCAAAGCGAAGAGAAGTCAACACTACTCTTCGTACCGAAAATAAGAAGATTTTGGAAATGAACATGAAGATGAAGGAGGCATTAAAGAATGGAGTTTGCAAACCATGCAGGGATTCACAAATTTTGAAAGAACTTCGTCATGAAAATGAACGACTCAAAGAAAGGATTGAGAAGATGTCAAAATTGCTTTTAATGTACGAGGAAAAGCAGGAAGTATCGCTTGAATTGAAGTTAGGTCCCCCCACAAGCTCATCAGATGGAGATTTTTTGAAGTTAGGTCTTCCTTGA 495 0.3798 MEFSLMTVLNIEQRDQNLRPTDRISSLEEIFQTLQRPDRKQRREIAKKLDLDRYQVKNWFQYKRRKVKNAKRREVNTTLRTENKKILEMNMKMKEALKNGVCKPCRDSQILKELRHENERLKERIEKMSKLLLMYEEKQEVSLELKLGPPTSSSDGDFLKLGLP 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01427 164 Coils Coil 79 99 - -
Trre3g01427 164 Pfam Homeodomain 23 68 IPR001356 GO:0003677
Trre3g01427 164 Gene3D - 17 88 - -
Trre3g01427 164 CDD homeodomain 27 71 IPR001356 GO:0003677
Trre3g01427 164 SUPERFAMILY Homeodomain-like 22 74 IPR009057 -
Trre3g01427 164 ProSiteProfiles 'Homeobox' domain profile. 10 70 IPR001356 GO:0003677
Trre3g01427 164 SMART HOX_1 19 74 IPR001356 GO:0003677
Trre3g01427 164 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 22 149 IPR042160 -
Trre3g01427 164 Coils Coil 111 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01427 Trre-Chr3 11076478 11078976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01427 23 135 Homeobox Transcription Factor Family AT1G05230 37.500 1.32e-21 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Trre3g01427 Homeodomain 9.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01427 - - gmx:100795075 95.1301