Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01418 ATGGATTTTTCAATCGGAGGCGTTCGCGGGTCCCGTGATGATGACATTAATAACGACGAAAGAAGATCTTCTTACAATCGTCTAACGTCTGATCAAACAGCCAAACTTGAAAATTTCATGAAAGAATCTGATCACCCAAACAAGGCCCAGCGACATCAGTTGGCTGAGGAGCTTGGGCTTCAACCCAAACAAGTTAAATACTGGTTCCAAAACAAGAGAACATTGTTGAAGAACCAACACGAGAAAAAAGACAACAAAAATCTTCGTTTGGAAAACGAAAGACTTCAGAATGAAAATCTTGTAATGAAAGAGGCATTGAAGGTCATACGGTGTGAACCCTGCGGTGGTCCCCCATTTCCGGTGGAAGAGCATGAACATTTCGTGCACAAAATGCAACAAGAAAATGCTCAGCTTAAACAAAAGATTGAGAAAACTTCCAAACTTCATACAAGTTTTATGGAGGGGAAAATATCTCAACGTATGTTCGAGCATGCTCTGAATTCTATAGATCGTGAAACATAA 522 0.4023 MDFSIGGVRGSRDDDINNDERRSSYNRLTSDQTAKLENFMKESDHPNKAQRHQLAEELGLQPKQVKYWFQNKRTLLKNQHEKKDNKNLRLENERLQNENLVMKEALKVIRCEPCGGPPFPVEEHEHFVHKMQQENAQLKQKIEKTSKLHTSFMEGKISQRMFEHALNSIDRET 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01418 173 MobiDBLite consensus disorder prediction 7 26 - -
Trre3g01418 173 SMART HOX_1 21 83 IPR001356 GO:0003677
Trre3g01418 173 MobiDBLite consensus disorder prediction 1 33 - -
Trre3g01418 173 SUPERFAMILY Homeodomain-like 15 83 IPR009057 -
Trre3g01418 173 Coils Coil 73 112 - -
Trre3g01418 173 ProSiteProfiles 'Homeobox' domain profile. 19 79 IPR001356 GO:0003677
Trre3g01418 173 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 21 159 IPR042160 -
Trre3g01418 173 PRINTS Lambda-repressor HTH signature 50 59 IPR000047 GO:0003677
Trre3g01418 173 PRINTS Lambda-repressor HTH signature 59 75 IPR000047 GO:0003677
Trre3g01418 173 Gene3D - 9 97 - -
Trre3g01418 173 Pfam Homeodomain 23 77 IPR001356 GO:0003677
Trre3g01418 173 Coils Coil 121 148 - -
Trre3g01418 173 CDD homeodomain 27 80 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01418 Trre-Chr3 11000500 11002834 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01418 18 166 Homeobox Transcription Factor Family AT1G73360 43.333 3.31e-36 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Trre3g01418 Homeodomain 2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01418 K09338 - mtr:112419334 189.504