Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01407 ATGGGACAACTTCCTTCACAGGACATTTTAGCATTGTTAGAATTTAAGAAATGCATCAAACATGACCCTACTGGTTATGTACTGAATTCGTGGAATGAAGAATCCATTGACTTCGATGGATGTCCGTCTTCGTGGAATGGCGTTCTTTGTAACGGTGGTAATGTTGCTGGTGTTGTTCTTGATAACTTAGGTCTTTCTGCTGATTCTGATTTGAGTGTTTTTTCTAATCTCTCTAAGCTTGTGAAACTTTCCTTGTCAAACAATTCAATATCCGGAAAATTACCTAACAACATTGCCGATTTTAAAAGCCTTGAATTTCTTGATATTTCCAATAACCTCTTTTCCTCGTCTATACCGGTTGGTATCGGTAAATTCGGTAGCTTGCAGAATCTGTCATTGGCTGGGAATAACTTTTCCGGTCCAATTCCGAATTCTATTTCGGAAATGTCTTCCATAAAATCTTTGGACTTCAGCCGTAACACCCTTTCCGGATCTCTTCCATCGTCATTGACTAAGCTGAATAGTCTTGTATCTCTTAACTTATCTCACAATGGCTTCACCGGAAAAATTCCAAAAGGTTTTGAGCTTATTTCCAGCCTTGATAAACTCGACTTGCACGGGAATAAGTTCGACGGTCCTTTAGATGTTGAATTTATGCTTTTATCAAGTGTTAGCTATGTTGATTTAAGCGATAACATGCTGCTGAGTTCCGATTCTGGTAAATTTCTTCCGGGAATATCCGAAAGTATCAAGTATCTGAATCTTAGCCACAACCAGCTAACTGGTATATTGGTCAGTGGAGCCGAACAACCTCTTTTCCAAGATTTGAAGGTGTTGGATCTCAGCTATAACCAACTGAATGGAGAATTACCTGGATTCGATTTTGTTTATGATCTTCAAATCCTTAAGCTTAGCAACAACAGATTTTCAGGTTTTATTCCTAATGGCTTACTTAAAGGAGATTCCTTGGTTTTAACTGACCTTGATTTGAGTGCCAACAATCTCTCAGGGCCATTGAGTATGATTACATCGACAACACTTAACTTTCTTAATCTCTCGTCGAATGGTTTCACCGGTGATCTACCACTGCTTACCGGAAGTTGCGCTGTACTTGATCTGTCAAATAACAAATTTGAAGGAAATTTAACTAGGATGTTGAAATGGGGGAACATAGAACAACTCGATCTCAGTGGGAATCGTTTGGCAGGGAACATCCCTGAGGCAACTCCTCAGTTTTTGCGATTGAATTATTTGAATCTGTCGAATAATCATCTCAGTGACGACATTCCGAAAGTGTTAACACAGTATCCAAAACTTAGAGTGCTTGATATCAGTTCCAACCAATTGAAAGGGTTTCTTCCAGCCGATTTCTTCACAATGCCGACATTACAAGAGCTCCATCTTGAAAATAATTTGATCAATGGCGGCATAAATTTATCGTCTTCTCTTGACCAGTCTCATCTTCAAGTTATTGATCTTTCTCACAACCAACTTAGTAGCTTTTTTCCTGACGAGTTTGGATCATTAACTAGCCTGAGAGTGCTCAACATTGCTGGAAATAACTTTGTTGGTTCTCTTCCGACCACTATTGCTGACATGAGTTCTCTAGACTCGTTGGATATATCGAATAACCGTTTCACTGGTCCACTTCCAAATAACTTGCCAAAGGGACTCAAAGACTTCAATGCTTCAGAAAATGATCTATCTGGAGTTGTCCCCGAAATTCTTAGGAAGTTCCCTAGTTCTTCTTTCTTTCCCGGGAATGCTAAGTTACATTTTCCAAATAGTCCTCCTGGATCAACCGTTCCAGCGACCGATAGTTCCAAGGAGAAGAAGTCTATGACCACAGTTGTTAAAGTAATAATTATAGTGTCATGTGTGGTTGCGCTCTTCATATTAATCTTACTTGCTGTCTTCATACATTACATACGTATGTCAAGATCTTCAACATCAGAATATGATACGAGTAAGGATATCCGCGGTCGCCCTCAACCAGTTATCTCTGGACCTATTCGTCCGACAGAGAGAGGCGGTCCTTTGGTTGTATCAGCTGAGGACCTCGTGGCTTCCCGTAAAGGATCACCATCAGAAATAATCAGCCCTGACGAAAAAACGGCAGCTGTAGCTGGATTCTCCCCATCAAAACACAGCCACTTTTCATGGTCACCTGAGTCTGGTGATTCATTGACAGCTGAAAATCTTTCAAGACTAGATACGAGGTCACCGGATAGGTTGGTTGGAGAGCTGCATTTTCTTGATGATACAACATCGTTGACGCCCGAGGAGCTATCGAGGGCACCGGCTGAAGTTTTGGGAAGAAGTAGTCATGGTACTTCTTACAAGGCAACTATGGATAATGGTTTGTTGTTGAGGGTGAAGTGGTTGAGAGAAGGAGTGGCGAAACAAAGAAAAGAATTTGTTAAAGAGATTAGAAAGTTTGCAAACATCCGGCATCCAAATGTTGTCGGTTTGAAAGGTTATTATTGGGGTCCTACGCAGCACGAGAAGCTTATTCTTTCTGATTTCATTTCACCAGGAAGTCTTGCAAGTTTTCTTTATGATCGACCGGGAAGAAACGGTCCACCATTAACATGGGCTCAGAGACTCAAAATAGCAGTTGATGTAGCACGTGGCCTGAACTATCTCCATTTCGACCGAGCTGTTCCTCACGGGAACCTTAAAGCTACAAATGTGTTGTTAGATACACCTGATATGAATGCACGCGTTGCTGATTATTGTCTTCACAGACTTATGACTCAAGCTGGTACTATTGAACAGATTCTTGATGCTGGTGTTTTAGGTTATCGTGCGCCGGAGTTAGCCGCTTCCAAGAAACCAATGCCTTCCTTCAAGTCAGATGTCTATGCTTTCGGCGTTATACTTTTGGAACTTTTAACCGGAAGGTGTGCTGGTGATGTCATATCCGGTGAAGACGGCGGTGTTGATCTTACAGATTGGTTAAGATTGCGAGTAGCAGAAGGTCGAGGCTCGGAATGTTTTGATGCTACTTTGATGTCAGACATGGGAAATCCAGTTGTAGAAAAGGGAATGAAGGAGGTTCTTGGAATAGCAATTCGATGTATCCGATCGATTTCTGAAAGACCTGGTATCAAGACTATATATGAAGATCTTTCTTCTATATAA 3144 0.4116 MGQLPSQDILALLEFKKCIKHDPTGYVLNSWNEESIDFDGCPSSWNGVLCNGGNVAGVVLDNLGLSADSDLSVFSNLSKLVKLSLSNNSISGKLPNNIADFKSLEFLDISNNLFSSSIPVGIGKFGSLQNLSLAGNNFSGPIPNSISEMSSIKSLDFSRNTLSGSLPSSLTKLNSLVSLNLSHNGFTGKIPKGFELISSLDKLDLHGNKFDGPLDVEFMLLSSVSYVDLSDNMLLSSDSGKFLPGISESIKYLNLSHNQLTGILVSGAEQPLFQDLKVLDLSYNQLNGELPGFDFVYDLQILKLSNNRFSGFIPNGLLKGDSLVLTDLDLSANNLSGPLSMITSTTLNFLNLSSNGFTGDLPLLTGSCAVLDLSNNKFEGNLTRMLKWGNIEQLDLSGNRLAGNIPEATPQFLRLNYLNLSNNHLSDDIPKVLTQYPKLRVLDISSNQLKGFLPADFFTMPTLQELHLENNLINGGINLSSSLDQSHLQVIDLSHNQLSSFFPDEFGSLTSLRVLNIAGNNFVGSLPTTIADMSSLDSLDISNNRFTGPLPNNLPKGLKDFNASENDLSGVVPEILRKFPSSSFFPGNAKLHFPNSPPGSTVPATDSSKEKKSMTTVVKVIIIVSCVVALFILILLAVFIHYIRMSRSSTSEYDTSKDIRGRPQPVISGPIRPTERGGPLVVSAEDLVASRKGSPSEIISPDEKTAAVAGFSPSKHSHFSWSPESGDSLTAENLSRLDTRSPDRLVGELHFLDDTTSLTPEELSRAPAEVLGRSSHGTSYKATMDNGLLLRVKWLREGVAKQRKEFVKEIRKFANIRHPNVVGLKGYYWGPTQHEKLILSDFISPGSLASFLYDRPGRNGPPLTWAQRLKIAVDVARGLNYLHFDRAVPHGNLKATNVLLDTPDMNARVADYCLHRLMTQAGTIEQILDAGVLGYRAPELAASKKPMPSFKSDVYAFGVILLELLTGRCAGDVISGEDGGVDLTDWLRLRVAEGRGSECFDATLMSDMGNPVVEKGMKEVLGIAIRCIRSISERPGIKTIYEDLSSI 1047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01407 1047 Pfam Leucine rich repeat N-terminal domain 6 51 IPR013210 -
Trre3g01407 1047 Pfam Protein tyrosine and serine/threonine kinase 769 967 IPR001245 GO:0004672|GO:0006468
Trre3g01407 1047 MobiDBLite consensus disorder prediction 652 678 - -
Trre3g01407 1047 SUPERFAMILY L domain-like 27 362 - -
Trre3g01407 1047 ProSiteProfiles Leucine-rich repeat profile. 414 436 IPR001611 GO:0005515
Trre3g01407 1047 ProSiteProfiles Protein kinase domain profile. 765 1047 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g01407 1047 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 364 598 - -
Trre3g01407 1047 Gene3D Phosphorylase Kinase; domain 1 755 842 - -
Trre3g01407 1047 FunFam Leucine-rich repeat receptor-like protein kinase 750 842 - -
Trre3g01407 1047 FunFam LRR receptor-like serine/threonine-protein kinase GHR1 4 247 - -
Trre3g01407 1047 Gene3D Ribonuclease Inhibitor 173 240 IPR032675 -
Trre3g01407 1047 SMART LRR_typ_2 486 508 IPR003591 -
Trre3g01407 1047 SMART LRR_typ_2 173 196 IPR003591 -
Trre3g01407 1047 SMART LRR_typ_2 296 320 IPR003591 -
Trre3g01407 1047 SMART LRR_typ_2 437 460 IPR003591 -
Trre3g01407 1047 SMART LRR_typ_2 412 436 IPR003591 -
Trre3g01407 1047 SMART LRR_typ_2 101 125 IPR003591 -
Trre3g01407 1047 SMART LRR_typ_2 77 100 IPR003591 -
Trre3g01407 1047 SMART LRR_typ_2 533 557 IPR003591 -
Trre3g01407 1047 SMART LRR_typ_2 509 532 IPR003591 -
Trre3g01407 1047 Pfam Leucine rich repeat 414 473 IPR001611 GO:0005515
Trre3g01407 1047 Pfam Leucine rich repeat 127 185 IPR001611 GO:0005515
Trre3g01407 1047 Pfam Leucine rich repeat 486 546 IPR001611 GO:0005515
Trre3g01407 1047 PANTHER OS07G0626500 PROTEIN 2 1047 - -
Trre3g01407 1047 SUPERFAMILY Protein kinase-like (PK-like) 768 1043 IPR011009 -
Trre3g01407 1047 Gene3D Ribonuclease Inhibitor 241 601 IPR032675 -
Trre3g01407 1047 Gene3D Ribonuclease Inhibitor 6 169 IPR032675 -
Trre3g01407 1047 Gene3D Transferase(Phosphotransferase) domain 1 844 1047 - -
Trre3g01407 1047 FunFam Pollen receptor-like kinase 1 843 1047 - -
Trre3g01407 1047 SUPERFAMILY RNI-like 274 578 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01407 Trre-Chr3 10931438 10934902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01407 12 573 Receptor kinase-like Gene Family AT1G55610 29.483 1.60e-43 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre3g01407 PK_Tyr_Ser-Thr 4.6e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01407 - - gmx:100793639 1684.85