Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01399 ATGGCTCATATTTGTCAATGTCTCAGTCGACTGTTAACTTTCCGGCGAGATTTTCCGGTGACCGTTGCCGGAAACAACCGTAAGACAGGGGAACAATTTGTGGAGGAAGTAGTTTCACTAGCACATGGTCTTGTCCAGCTTGGTGTCACACCTGGTGATGTTGTAGCCATCTCTGCTTACAACAGTGATTGGTATCTAGAATGGTTATTAGCCATTGCATTTGTTGGAGGAATTGCTGCTCCTTTGAACTATCGTTGGAGTTTTGATGAAGCAAGATTAGCAATGAAAGCAGTGAAGCCAGTGATGTTAGTGATTGATGAGAGCTGCTATTCTTGGTACTTCAAATTCCAACAAAATGATATTCCATCTCTAAAATGGCATGTTTTGTTGGATTCCCCTTCTTCAGATTTTACAAACAAATCGAATGTGTTGACTCAAGGAATACTTATGAAGCATCTTGTAAAGCCTTTAGAGTTGAATTACTCGTCGGCACCAGAAGGAGCTGTCATAATATGCTTTACTTCAGGAACTACTGGAAAACCGAAGGGAGTGACAATAACCCATGAAGCTTTGATCATACAGTCCTTAGCCAAGATTGCCATAGTTGGATATAGCGAAGATGATGTCTATCTTCATACTGCGCCATTGTGTCACATCGGTGGCTTGTCATCAGCCATGGCCATGCTTATGGTTGGAGGTTGCCATGTATTCATGCCGAAGTTTGATGCAAAATTAGCTGTTGGTGCCATAGAACGATATGCTGTGACATCTTTTATCACAGTTCCTGCAATGATTACCGGTCTTAATTCTATTATTAGGTACCATGAAACCTGGAAAGGCGGAGAAACTGTCGAGAAAATACTCAATGGTGGTGGAAGCCTCTCGCATAAGCTTATTAAAGACACTAACATATTCTTCCATAAAGCTAAGCTTATTTCTGCTTATGGGATGACAGAAGCATGCTCTTCACTGACATTCTTGACGCTGTATGATCCGATGCAAAAAACCACTAGCCATCCCTTTCGAACAAATGGTGAGGTAGAATCCAAATATCTCATTGACCAGCCACAAGGTGTTTGTGTTGGCAAGGCTGCACCTCATGTCGAACTGAAGATATGCTCAGATTCCTCTGGCGACAATGGTAGAATTTTAACTAGAGGACCACATTTAATGCTCAGGTATTGGGATCAAACTCTCGCAAACTCATCTAATCAGAAGAATGAAGTATGGCTTGACACTGGTGACATTGGATCAATGGACTGTCATGGTAACTTGTGGCTCATTGGACGTACAAATGGTCGAATCAAGAGTGGTGGTGAAAATATTTACCCCGAAGAGGTTGAGGCAATTCTACTAGAACATCCAGGGATTGCAAGTGTTGTGATTGTGGGAATTCCAGATGCGCGTTTCACTGAGACGGTAGCAGCATGTATCCAACCAAGAGAAAATTGGCAATGGTTAGAGCACTCTACTTCAAATGAAGACAATCACTTATCTAGAAAGAATCTCCAACAATACTGTCTAGAAAATAACTTAAGCAGGTTTAAGATACCAAAGATATTTATTGAATGGAGGAAGCCTTTTCCAGTCACTACCACAGGAAAAATAAGAAGAGACCAAGTAAGAAAGGAGCTTATGTCTGAGCTGCAAATTTTGCATAGTAATCTTTGA 1671 0.4129 MAHICQCLSRLLTFRRDFPVTVAGNNRKTGEQFVEEVVSLAHGLVQLGVTPGDVVAISAYNSDWYLEWLLAIAFVGGIAAPLNYRWSFDEARLAMKAVKPVMLVIDESCYSWYFKFQQNDIPSLKWHVLLDSPSSDFTNKSNVLTQGILMKHLVKPLELNYSSAPEGAVIICFTSGTTGKPKGVTITHEALIIQSLAKIAIVGYSEDDVYLHTAPLCHIGGLSSAMAMLMVGGCHVFMPKFDAKLAVGAIERYAVTSFITVPAMITGLNSIIRYHETWKGGETVEKILNGGGSLSHKLIKDTNIFFHKAKLISAYGMTEACSSLTFLTLYDPMQKTTSHPFRTNGEVESKYLIDQPQGVCVGKAAPHVELKICSDSSGDNGRILTRGPHLMLRYWDQTLANSSNQKNEVWLDTGDIGSMDCHGNLWLIGRTNGRIKSGGENIYPEEVEAILLEHPGIASVVIVGIPDARFTETVAACIQPRENWQWLEHSTSNEDNHLSRKNLQQYCLENNLSRFKIPKIFIEWRKPFPVTTTGKIRRDQVRKELMSELQILHSNL 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01399 556 SUPERFAMILY Acetyl-CoA synthetase-like 4 547 - -
Trre3g01399 556 Pfam AMP-binding enzyme 17 437 IPR000873 -
Trre3g01399 556 ProSitePatterns Putative AMP-binding domain signature. 171 182 IPR020845 -
Trre3g01399 556 Pfam AMP-binding enzyme C-terminal domain 446 535 IPR025110 -
Trre3g01399 556 Gene3D - 433 549 IPR045851 -
Trre3g01399 556 CDD AFD_class_I 171 537 - -
Trre3g01399 556 Gene3D - 5 431 IPR042099 -
Trre3g01399 556 PANTHER ACYL-COA SYNTHETASE 3 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01399 Trre-Chr3 10837438 10840968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01399 26 464 Monolignol Biosynthesis Gene Families AT3G21240 30.044 1.88e-41 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01399 K14760 - gmx:100809925 862.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g01399 3 10837438 10840968 Trre3g01399 3 10837438 10840968 ECH