Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01398 ATGTCAGCAGTGAATAATCTCCGAATGGATCTTGGAAGACCCGCGTCAGGTAGAAGAAGATTGAAAGATTTATTGCTTCAGAAGGATAATCGTGTTTGTTCTGATTGTAATGCTCCAGATCCTAAATGGGCGTCTGCCAACATTGGAGTGTTTATATGCTTAAAATGTTGCGGTGTGCACAGAAGCCTTGGTACTCATATTTCAAAGGTTTTATCTGTGACATTAGATGAATGGTCAGATGATGAAGTAGATGCAATGATAGAAGTTGGAGGAAATGCTTCCGCTAATTCAATTTATGAGGCCTATATTCCTGAAGGATATACGAAACCCGGACCAGATGCCAATCATGAGCAGCGTTCAAAGTTTATACGGTCAAAGTATGAGTTGCAAGAGTTTTTGAAGCCTAGTTTGCGCATTGTGTCTGGAAAAAGCAATCTATCAAGTTCTTCCAACAGTTTTATGGATAGTTTTAAAAGCGCTGCTTCACAGAGAATGGAAGGTATGGTAGAATTCATTGGAATGTTGAAGGTGAAAGTGATTCAAGGCACAAATTTAGCCATCCGGGATATAAAGTCAAGTGACCCATATGTTGTTTTAAACCTCGGCTCACAGACTGTACAGACAACTGTAATGAGGAGTAATTTGAATCCAGTCTGGAATGAGGAGCATATGCTGTCTGTTCCCGAGCATTATGGACAGCTGAAATTGAAAGTATATGATTATGACACATTTTCTGCTGATGATATAATGGGAGAAGCAGACATTGATCTTCAGTCACTGATAACATCTGCCATGGCATTTGGAGATGCTGGAATGTTTGGAGATATGCAGATCGGAAAATGGTTGAAATCTGACGACAATGCACTTATTGAGGATAGCCCAGTCGAAATTTCTGATGGTAAGGTTAAACAAATGATGACACTCAAACTCCAGAATGTTGAATCTGGAGAAATAGAGTTAGAACTCGAATGGATTCCTCTTGATCAATAG 990 0.396 MSAVNNLRMDLGRPASGRRRLKDLLLQKDNRVCSDCNAPDPKWASANIGVFICLKCCGVHRSLGTHISKVLSVTLDEWSDDEVDAMIEVGGNASANSIYEAYIPEGYTKPGPDANHEQRSKFIRSKYELQEFLKPSLRIVSGKSNLSSSSNSFMDSFKSAASQRMEGMVEFIGMLKVKVIQGTNLAIRDIKSSDPYVVLNLGSQTVQTTVMRSNLNPVWNEEHMLSVPEHYGQLKLKVYDYDTFSADDIMGEADIDLQSLITSAMAFGDAGMFGDMQIGKWLKSDDNALIEDSPVEISDGKVKQMMTLKLQNVESGEIELELEWIPLDQ 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01398 329 Gene3D Arf GTPase activating protein 8 138 IPR038508 -
Trre3g01398 329 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 171 329 - -
Trre3g01398 329 SMART arf_gap_3 18 140 IPR001164 GO:0005096
Trre3g01398 329 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 10 329 IPR044518 GO:0005096|GO:0005543
Trre3g01398 329 SUPERFAMILY ArfGap/RecO-like zinc finger 18 135 IPR037278 -
Trre3g01398 329 CDD ArfGap 21 127 - -
Trre3g01398 329 ProSiteProfiles C2 domain profile. 155 270 IPR000008 -
Trre3g01398 329 Pfam Putative GTPase activating protein for Arf 19 134 IPR001164 GO:0005096
Trre3g01398 329 ProSiteProfiles ARF GTPase-activating proteins domain profile. 18 132 IPR001164 GO:0005096
Trre3g01398 329 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 171 327 IPR035892 -
Trre3g01398 329 CDD C2_ArfGAP 172 316 - -
Trre3g01398 329 SMART C2_3c 174 269 IPR000008 -
Trre3g01398 329 Gene3D C2 domain 171 329 IPR035892 -
Trre3g01398 329 FunFam Arf-GAP with dual PH domain-containing protein 1 13 141 - -
Trre3g01398 329 Pfam C2 domain 174 263 IPR000008 -
Trre3g01398 329 PRINTS HIV Rev interacting protein signature 30 49 IPR001164 GO:0005096
Trre3g01398 329 PRINTS HIV Rev interacting protein signature 49 66 IPR001164 GO:0005096
Trre3g01398 329 PRINTS HIV Rev interacting protein signature 70 91 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01398 Trre-Chr3 10831195 10835699 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01398 4 329 C2H2 Transcription Factor Family AT4G05330 73.810 0.0 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01398 K12486 - gmx:100810806 558.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g01398 3 10831195 10835699 Trre3g01398 3 10831195 10835699 ECH