Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01396 ATGACTTCTTCTACACATGATCTCACAGATAACGAGGCTGATGGACAGCAGCAGTCAGAATCACAGATGCAGCCGCCTATATCTGCAAATGGAATTTCTCATGCTGGTATTGATACTCAGGTTGTTCAGTATGCAGCACCTCCGCAGCTTGGCGCTGGGCATGCTATGGCACCGCCTCCTTATCCATATCCGGATCCTTACTACAGAAGCATGTTTGCTCCCTATGATGCACAACCATATCCGCTGCAACCCTACGGTGGACATCCAATGGCCAATCTTCAGTTAATGGGAATCCAGCATCCAGGTGTTCCTTTGCCAACTGATGCCGTTGAGGAGCCTGTGTTTGTCAATGCAAAACAGTATCATGGTATTTTAAGACGCAGACAGTCTCGTGCTAAAGCTGAATCGGAAAAGAAAGTTACAAGGAATCGGAAGCCATACTTGCACGAATCTCGACATTTGCACGCACTGAAAAGAGCAAGAGGATGTGGAGGTCGGTTTCTGAATTCAAAGAAAGACGAGAATCAACAAGATGAGGTTGGATCAGCTGACAATTCACATTCCAATATCAATCTCAATTCCGATAGAAACGATCTTGCACCATCCGATAAAAATTCTTGA 621 0.4541 MTSSTHDLTDNEADGQQQSESQMQPPISANGISHAGIDTQVVQYAAPPQLGAGHAMAPPPYPYPDPYYRSMFAPYDAQPYPLQPYGGHPMANLQLMGIQHPGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESEKKVTRNRKPYLHESRHLHALKRARGCGGRFLNSKKDENQQDEVGSADNSHSNINLNSDRNDLAPSDKNS 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01396 206 PRINTS CCAAT-binding transcription factor subunit B signature 113 135 IPR001289 GO:0003700|GO:0006355
Trre3g01396 206 PRINTS CCAAT-binding transcription factor subunit B signature 144 167 IPR001289 GO:0003700|GO:0006355
Trre3g01396 206 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 112 167 IPR001289 GO:0003700|GO:0006355
Trre3g01396 206 MobiDBLite consensus disorder prediction 166 180 - -
Trre3g01396 206 Gene3D - 110 171 - -
Trre3g01396 206 MobiDBLite consensus disorder prediction 1 32 - -
Trre3g01396 206 MobiDBLite consensus disorder prediction 164 206 - -
Trre3g01396 206 ProSitePatterns NF-YA/HAP2 subunit signature. 115 135 IPR018362 GO:0003677|GO:0016602
Trre3g01396 206 MobiDBLite consensus disorder prediction 126 148 - -
Trre3g01396 206 MobiDBLite consensus disorder prediction 181 200 - -
Trre3g01396 206 SMART cbf3 109 170 IPR001289 GO:0003700|GO:0006355
Trre3g01396 206 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 13 194 IPR001289 GO:0003700|GO:0006355
Trre3g01396 206 ProSiteProfiles NF-YA/HAP2 family profile. 110 170 IPR001289 GO:0003700|GO:0006355
Trre3g01396 206 MobiDBLite consensus disorder prediction 128 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01396 Trre-Chr3 10793729 10797230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01396 1 206 CCAAT-HAP2 Transcription Factor Family AT1G30500 54.327 4.05e-68 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Trre3g01396 CBFB_NFYA 2.3e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01396 K08064 - gmx:100809036 333.569