Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01395 ATGGCACTTTCTATGCATAAAGATATTAATAATCAAATGGATGCTGGAAAATATGTAAGGTATACTCCTGAACAAGTTGAAGCTTTGGAAAGAGTTTATTCAGAATGTCCTAAACCTAGTTCATTGAGAAGACAACAACTTATAAGAGAATGTCCTATTCTTTCTAACATTGAACCTAAACAGATCAAAGTTTGGTTCCAAAATCGAAGGTGTCGTGAGAAGCAAAGAAAAGAAGCATCACGTTTGCAGACAGTGAATAGAAAGCTATCTGCAATGAACAAGTTGTTAATGGAAGAAAATGACCGTCTGCAGAAGCAAGTTTCTCATCTTGTTTATGAGAATGGATACATGAAGCATCAGATTCATACTGCTTCTGCTGCAACTACCACAGATAATAGCTGTGATTCTGTGGTAATGAGTGGTCAAAATCAACAGCAAAACCCAAATCAGCGTCCTCAAAGGGATGCAAGCAACCCAGCTGGTCTTCTCGCGGTTGCTGAGGAGACCCTGGCAGAGTTCCTTTCTAAGGCTACTGGAACTGCTGTCGACTGGGTCCAGATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGTATCGTTGCTGTTTCTCGCAATTGTAGTGGGATAGCAGCACGTGCCTGCGGCCTTGTGAGTCTAGAGCCCACTAAGGTTGCCGAGATACTTAAAGATCGACTGTCATGGTACCGTGATTGCCGATGTGTTGAAGTGTTGAGTATTGTCCCTACTGGTGGAGGTGGTACAATCGAGCTTATGTACATGCAGACTTACGCGCCTACAACATTGGCCGCAGCACGAGATTTTTGGACACTGAGATACACTACTACTTTGGAAGATGGAAGTCTTGTGATATGTGAGAGATCGTTGAATGCTTCAACTGGTGGTCCAGCAGGGCCTAGTTCGTCGAATTTCGTGAGAGCTGAAATGCTTCCTAGCGGATTTCTTATTCGACCATGCGAGGGTGGTGGATCCATTATTCATATTGTTGATCATGTTGACTTAGATGTTTGGAGTGTCCCTGAAGTTTTAAGACCCCTCTATGAATCTTCAAAAATCTTGGCTCAAAAGTTGACTATTGCAGCATTGCAACACATAAGACAGATAGCACAAGAATCAAGTGGTGAAATTCAGTATGGTGGCGGGCGCCAACCTGCTGTTTTGAGAACTTTTAGTCAGAGACTTTGCAGGGGTTTCAACGATGCTGTGAATGGATTTGTTGATGATGGTTGGTCATTGCTTGGAAATGATGGGATTGAAGATGTGACAATAGCTGTGAACTCTTCTCCGAATAAGTTTTTAGGGTCGAATTACTCAACAATGTTCCCAACATTTGGAGGTGGTGTCTTGTGTGCCAAGGCATCAATGCTGCTGCAGAATGTTCCTCCTGCTTTACTTGTTCGATTTTTGAGGGAGCATCGATCAGAGTGGGCTGATTATGGTGTTGATGCATATTCTGCTGCTTGTCTCAAGTCTAGCCCCTATCCAGTTCCATGCGCAAGATCTGGTGGCTTCCCCAGCAGCCAGGTCATTTTACCTCTTGCTCCTACGATCGAGCATGAAGAGTTCCTGGAGGTAGTTCGTATAGAAGGTCATGCATTTTCCCCAGAAGATATTGCGTTGGCACGTGATATGTATCTTTTGCAGCTCTGCAGTGGAATTGATGAAAGTTCAATTGGAGCATGTGCTCAACTTGTGTTTGCACCTATTGATGAGTCCTTTGCAGATGACGCCCTTTTGTTGCCTTCCGGTTTTCGTGTCATTCCCTTGGATCCCAAATCAGATGGTCCCTCAAGGACATTGGATTTGACATCAACACTCGAAGGATCTAGTAATGCTCGTGCAGCCAGTGAAGGTGATTCAAATGGATACAACCTTAGGTCGGTTCTTACGATTGCATTTCAATTTACCTTCGAGAATCATTTGCGCGACAACGTGGCTGCTATGGCTCGTCAATATGTGCGTAGTGTTGTGGGATCGGTTCAGAGAGTTGCCATGGCAATTGCTCCCTCTCGACCAGGTACTCAGCTAGGTCCAAAACCACATCCCGGTTCGCCAGAAGCTCATGCTTTAGCACGATGGATCAGTAGAAGCTACAGGGAACACACTAAAACCGATCTTTTTCGCATTGAGTCCGCTACTAGCGATGCAATCTTGAAGCAACTTTGGGAACATTCTGATGCAATTATGTGCTGTTCCGTAAAATCAAATGCATCTCCAATATTCTCTTTTGCAAACCAAGCCGGTCTTGACATGCTTGAAACTACTCTTGTTGCTCTTCAAGATATAATGCTCGATAAAGTTCTCAACGAAGCTGGTAGAAAGATTCTTTGCTCTGAATTCTCTAAGATAATGCAACAGGGTTATGCATATCTTCCAGGAGGGATATGTGTCTCAAGTATGAATAGGCCAGTGTCTTATGATCAAGCCATTGCATGGAAAGTTCTCAATGATGATGATGCCAATCACTGCATAGCTTTCATGTTCATCAACTGGTCCTTTGTTGGATGA 2526 0.4382 MALSMHKDINNQMDAGKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMKHQIHTASAATTTDNSCDSVVMSGQNQQQNPNQRPQRDASNPAGLLAVAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGIAARACGLVSLEPTKVAEILKDRLSWYRDCRCVEVLSIVPTGGGGTIELMYMQTYAPTTLAAARDFWTLRYTTTLEDGSLVICERSLNASTGGPAGPSSSNFVRAEMLPSGFLIRPCEGGGSIIHIVDHVDLDVWSVPEVLRPLYESSKILAQKLTIAALQHIRQIAQESSGEIQYGGGRQPAVLRTFSQRLCRGFNDAVNGFVDDGWSLLGNDGIEDVTIAVNSSPNKFLGSNYSTMFPTFGGGVLCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSAACLKSSPYPVPCARSGGFPSSQVILPLAPTIEHEEFLEVVRIEGHAFSPEDIALARDMYLLQLCSGIDESSIGACAQLVFAPIDESFADDALLLPSGFRVIPLDPKSDGPSRTLDLTSTLEGSSNARAASEGDSNGYNLRSVLTIAFQFTFENHLRDNVAAMARQYVRSVVGSVQRVAMAIAPSRPGTQLGPKPHPGSPEAHALARWISRSYREHTKTDLFRIESATSDAILKQLWEHSDAIMCCSVKSNASPIFSFANQAGLDMLETTLVALQDIMLDKVLNEAGRKILCSEFSKIMQQGYAYLPGGICVSSMNRPVSYDQAIAWKVLNDDDANHCIAFMFINWSFVG 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01395 841 MobiDBLite consensus disorder prediction 132 157 - -
Trre3g01395 841 SUPERFAMILY Homeodomain-like 17 79 IPR009057 -
Trre3g01395 841 SMART HOX_1 14 80 IPR001356 GO:0003677
Trre3g01395 841 SUPERFAMILY Bet v1-like 165 376 - -
Trre3g01395 841 SUPERFAMILY Bet v1-like 413 647 - -
Trre3g01395 841 Pfam MEKHLA domain 695 839 IPR013978 -
Trre3g01395 841 Coils Coil 82 106 - -
Trre3g01395 841 ProSiteProfiles 'Homeobox' domain profile. 12 76 IPR001356 GO:0003677
Trre3g01395 841 CDD START_ArGLABRA2_like 159 375 - -
Trre3g01395 841 Pfam Homeodomain 17 75 IPR001356 GO:0003677
Trre3g01395 841 Gene3D - 10 83 - -
Trre3g01395 841 CDD homeodomain 17 77 IPR001356 GO:0003677
Trre3g01395 841 SMART START_1 164 374 IPR002913 GO:0008289
Trre3g01395 841 FunFam Homeobox-leucine zipper protein REVOLUTA 17 72 - -
Trre3g01395 841 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 13 840 IPR044830 GO:0003700
Trre3g01395 841 CDD bZIP 69 108 - -
Trre3g01395 841 Gene3D - 190 376 IPR023393 -
Trre3g01395 841 ProSiteProfiles START domain profile. 155 356 IPR002913 GO:0008289
Trre3g01395 841 Pfam START domain 165 372 IPR002913 GO:0008289
Trre3g01395 841 MobiDBLite consensus disorder prediction 132 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01395 Trre-Chr3 10776468 10781336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01395 1 840 Homeobox Transcription Factor Family AT2G34710 77.752 0.0 1369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre3g01395 START 2.6e-52 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01395 K09338 - gmx:100807428 1505.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g01395 3 10776468 10781336 Trre3g01395 3 10776468 10781336 ECH