Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01394 ATGAAATTTGTTGTGAGTGTTTACCTTATACTATGTTTTGCCTCTTCCATTTTCATTGTAATGGCAATAGTACAAAGAACACAACACATATTTGGAGGTGATGAATACTATGTTCGTGTGATTAATGGCTTCACTGATAATTCTTCTGTTCCTTTAGTTATTTGGTGTTCATCAGAAGAAATGGATCTTGGTGGTCGTGCTTTGCAAGAACATGATGAATTTAGTTGGATCATGAGACCAAATTTTTGGAGCAGCAATTATATGAAGTGTACAATGAAATGGGATAGCACAAGGAAGAGTTTTGATGCATTTGAGGCTTCTAGGGACATAGAACGTTGTGGATTACATAGGTTATGTTCTTGGAGGGTTACACAAGATGGGTTTTATTTTAGTAATGATGAAATTCATTGGAGGAAGGATTTCATATGGTGA 432 0.3542 MKFVVSVYLILCFASSIFIVMAIVQRTQHIFGGDEYYVRVINGFTDNSSVPLVIWCSSEEMDLGGRALQEHDEFSWIMRPNFWSSNYMKCTMKWDSTRKSFDAFEASRDIERCGLHRLCSWRVTQDGFYFSNDEIHWRKDFIW 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01394 143 Pfam Plant self-incompatibility protein S1 38 143 IPR010264 -
Trre3g01394 143 PANTHER - 35 137 IPR010264 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01394 Trre-Chr3 10755799 10756230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01394 50 127 Carbohydrate Esterase AT3G16970 31.646 1.15e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01394 - - gmx:100792052 256.144