Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01370 ATGGAGGATTCCGAAGGAGTCCTCAACTTCGATTTCGAAGGCGGACTCGACACACAACAACCTTCCGCCGCCACCGCATCCGCCTCCGTTCCCGCCGCACCTTCCGGTCCTATTTCCCAACCCGATTCATACTTACCTCCTTCTAATGCTTCCAATGGTGCAACCAATACTCCTTCCGTTACTGAACCTGTTTCTGGTAATGTTCCTGGTCGACGGAGTTTCCGTCAAACGGTTTGTCGTCATTGGCTTCGTAGTTTGTGTATGAAAGGTGAAGCGTGTGGTTTCTTGCATCAGTATGATAAGGCTCGGATGCCGGTGTGCCGGTTTTTTCGATTGTATGGAGAATGTCGTGAGCAAGATTGTGTTTATAAGCATACTAATGAAGATATCAAGGAGTGTAACATGTACAAGTTAGGATTTTGTCCTAATGGGCCTGATTGTCGATACAGGCATGCAAAAGCTCCTGGACCTCCGCCTCCAATTGAAGAGGTCCTTCAAAAGATCCAACATTTATATTCTTACAACTATAACAATTCTCACAAATTTATCCAACAAAGGGGTTCTAACTATAATACTCAACAAGCTGATAAGTCTCAGTTTCCTCAAGGAATTAATTCTGCAAACCAAGGTGCGGTTGGAAAACCATTAGCTGCAGATTCTGGAAATGTCCAGCAGCAGCAGCAGCAGCAGCAGCAACAAGTTCAACAGTCTCAGCCGCAGGTTAGCCAGAACCAAGCGCAAAATCTTGCTAATGGCCAACCCAATCAAGCCAATCGAACGTCAACCCCTTTACCTCAAGGAATATCTAGGTATTTTATTGTTAAGAGTTGCAATCGTGAAAATTTGGAGTTATCTGTACAACAAGGAGTATGGGCAACTCAAAGGAGCAATGAATCAAAATTAAATGAAGCATTTGACTCTGTGGAAAATGTGATATTGGTTTTCTCAGTCAACCGTACTCGACATTTCCAGGGTTGTGCAAAGATGACATCCAGAATTGGTGGTTCTGTTGCTGGGGGAAACTGGAAATATGCTCATGGAACGGCACATTATGGGCGAAATTTCTCTGTTAAATGGTTGAAGTTATGCGAACTGTCATTCCACAAAACCCGCCATTTGAGAAATCCATACAACGAGAACTTACCCGTGAAGATAAGTAGAGATTGTCAGGAGCTCGAACCTTCTATCGGTGAGCAGTTGGCATCCTTGCTGTATACTGAGCCAGACAGCGAACTTATGGCTATCTCAATTGCAGCAGAGTCTAAACGAGAAGAAGAGAAAGCAAAGGGAGTGAATCCAGATAATGGAGGAGAAAATCCAGACATTGTCCCATTTGAAGACAACGAAGAAGAGGAAGAGGAAGAAAGTGATGAAGAGGATGAGAGCTTTGGTCAAGCTGTAGGGCCAGCTGTTCAAGGAAGAGGTAGGGGCAGAGGTATGATGTGGCCCCCTCACATGCATATGGGACGTGGAGCCAGACCCATGCATGGAATGCAAGGTTTTAACCCAATGATGGGCGATGGATTATCCTATGGGCCTGCTGGGCCTGATGGTTTTGGTATGCCAGATCTTTTTGGCATGGGTCCCCGAGGCTTTGGTCCATATGGTCCTAGGTTCTCTGGTGATTTTGGAGCCCCCCCAGCTGCCATGATGTTCCGAGGGCGACCCTCACAACCTGGGATGTTTCCCGGTGGTGGATTTGGGATGATGATGAATCCTGGTCGCGGTCCCTTTATGGGGGGAATGGGGGTTCCAGGTCCGAACGGACCAAGAGGTGGTAGGCCTGTCAATATGCCACCGATGTTTCCACCACCTCCGCCTCCACCACAAAATATAAACCGCGTCGCTAAAAGAGATCAAAGGACAAGTGACCGGAATGATAGGTTCAGTTCAGGACCAGATCAAGGTAAGAGTCAAGACATGCTCAGTCAAAGTGGGGGTCCTGATGATGACATGCAGTATCAACAAGGATACAAGTCACAGCAGGATGAAAGGAACGACGATAGTGAAAGTGAAGATGAGGCACCTAGGCGGTCAAGACACGGAGAGGGAAAAAAACGAAAAGGCGAAGCTTAG 2076 0.4682 MEDSEGVLNFDFEGGLDTQQPSAATASASVPAAPSGPISQPDSYLPPSNASNGATNTPSVTEPVSGNVPGRRSFRQTVCRHWLRSLCMKGEACGFLHQYDKARMPVCRFFRLYGECREQDCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKAPGPPPPIEEVLQKIQHLYSYNYNNSHKFIQQRGSNYNTQQADKSQFPQGINSANQGAVGKPLAADSGNVQQQQQQQQQQVQQSQPQVSQNQAQNLANGQPNQANRTSTPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNESKLNEAFDSVENVILVFSVNRTRHFQGCAKMTSRIGGSVAGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYTEPDSELMAISIAAESKREEEKAKGVNPDNGGENPDIVPFEDNEEEEEEESDEEDESFGQAVGPAVQGRGRGRGMMWPPHMHMGRGARPMHGMQGFNPMMGDGLSYGPAGPDGFGMPDLFGMGPRGFGPYGPRFSGDFGAPPAAMMFRGRPSQPGMFPGGGFGMMMNPGRGPFMGGMGVPGPNGPRGGRPVNMPPMFPPPPPPPQNINRVAKRDQRTSDRNDRFSSGPDQGKSQDMLSQSGGPDDDMQYQQGYKSQQDERNDDSESEDEAPRRSRHGEGKKRKGEA 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01370 691 ProSiteProfiles Zinc finger C3H1-type profile. 127 154 IPR000571 GO:0046872
Trre3g01370 691 MobiDBLite consensus disorder prediction 190 209 - -
Trre3g01370 691 Gene3D - 69 131 - -
Trre3g01370 691 SUPERFAMILY CCCH zinc finger 73 104 IPR036855 GO:0046872
Trre3g01370 691 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 23 683 IPR045168 -
Trre3g01370 691 MobiDBLite consensus disorder prediction 443 462 - -
Trre3g01370 691 SMART c3hfinal6 129 153 IPR000571 GO:0046872
Trre3g01370 691 SMART c3hfinal6 73 99 IPR000571 GO:0046872
Trre3g01370 691 SMART c3hfinal6 101 127 IPR000571 GO:0046872
Trre3g01370 691 MobiDBLite consensus disorder prediction 421 482 - -
Trre3g01370 691 MobiDBLite consensus disorder prediction 661 691 - -
Trre3g01370 691 CDD YTH 270 404 IPR007275 GO:0003723
Trre3g01370 691 MobiDBLite consensus disorder prediction 580 691 - -
Trre3g01370 691 FunFam Cleavage and polyadenylation specificity factor 30 kDa subunit 68 129 - -
Trre3g01370 691 Pfam YT521-B-like domain 269 331 IPR007275 GO:0003723
Trre3g01370 691 Pfam YT521-B-like domain 348 403 IPR007275 GO:0003723
Trre3g01370 691 MobiDBLite consensus disorder prediction 219 264 - -
Trre3g01370 691 MobiDBLite consensus disorder prediction 1 68 - -
Trre3g01370 691 MobiDBLite consensus disorder prediction 15 68 - -
Trre3g01370 691 MobiDBLite consensus disorder prediction 190 264 - -
Trre3g01370 691 MobiDBLite consensus disorder prediction 592 612 - -
Trre3g01370 691 ProSiteProfiles YTH domain profile. 269 404 IPR007275 GO:0003723
Trre3g01370 691 Gene3D ph1033 like domains 247 409 - -
Trre3g01370 691 ProSiteProfiles Zinc finger C3H1-type profile. 73 100 IPR000571 GO:0046872
Trre3g01370 691 MobiDBLite consensus disorder prediction 617 631 - -
Trre3g01370 691 MobiDBLite consensus disorder prediction 632 660 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01370 Trre-Chr3 10543755 10554213 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre3g01370 YTH 1.3e-44 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01370 K14404 - gmx:100802826 1050.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g01370 3 10543755 10554213 Trre3g01370 3 10543755 10554213 ECH