Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01350 ATGTACCTTCAGCGTCTCAAATCTCCATATTTTCTAGGGTTTAATCGACCGGCGCTTACAATGGTTCTTCAAAACGATATTGATTTGTTGAATCCACCTGCTGAACTCGAAAAGAGGAAGCACAAACTCAAACGACTTGTTCCATCCCCAAATTCCTTCTTCATGGATGTCAAGTGCCAAGGTTGCTTTAACATAACAACTGTATTCAGTCACTCCCAAACTGTTGTTGTTTGTGGTAACTGTCAAACGGTGTTGTGCCAACCAACTGGTGGTAAAGCAAGACTAACAGAGGGATGCTCCTTCAGAAAGAAGGGAGATTAG 321 0.4237 MYLQRLKSPYFLGFNRPALTMVLQNDIDLLNPPAELEKRKHKLKRLVPSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLTEGCSFRKKGD 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01350 106 SUPERFAMILY Zn-binding ribosomal proteins 50 104 IPR011332 GO:0006412
Trre3g01350 106 Pfam Ribosomal protein S27 50 104 IPR000592 GO:0003735|GO:0005840|GO:0006412
Trre3g01350 106 FunFam 40S ribosomal protein S27 21 106 - -
Trre3g01350 106 Gene3D - 25 105 IPR023407 -
Trre3g01350 106 ProSitePatterns Ribosomal protein S27e signature. 58 90 IPR000592 GO:0003735|GO:0005840|GO:0006412
Trre3g01350 106 Hamap 30S ribosomal protein S27e [rps27e]. 44 104 IPR000592 GO:0003735|GO:0005840|GO:0006412
Trre3g01350 106 PANTHER 40S RIBOSOMAL PROTEIN S27 19 106 IPR000592 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01350 Trre-Chr3 10194168 10195371 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01350 21 106 Cytoplasmic Ribosomal Protein Gene Family AT3G61110 95.349 4.52e-59 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01350 K02978 - minc:123230388 176.407