Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01339 ATGGCTAATTCAGCTGAACCTTCATCATCTTTGAGTTTTACATCATCTTCCCATTTATCAAATGGATCCATTAGTCACAACCTATGTTCTTCTAATGGTACCGATCATGCTCGAAACCTCGAGGTTATTAGTTTGAGTAAGCTTAGTTCTAACTTGGAGCAGCTTTTGATTGATTCTGATTATGATTATAGTGATGCTGAAATAGTTGTGGAGGGGATTTCGGTTAGGATTCATCGGTGTATTTTAGGTTCAAGGAGTAAGTTTTTTCATGAATTGTTCAAGAGAGGTAAAGATAAAGTATCATCAAAGAATGAAGGGAAATTGAAGTATTGTTTGAGTGATTTGTTGCCTTATGGTAAAATTGGATATGAAGCTTTTAATATATTCTTGAGTTATGTATATAGCGGTAAACTCAAGCCGTCTCCGATGGAGGTGTCTACATGTGTTGATAAAGTTTGTGCTCATGATGCTTGTGGACCTGCAATTAACTTTGCTGTGGAGTTGATGTATGCCTCTTCCATATTCCAAATACCGGAGTTGGTATCACTTTTTCAGCGACGTCTTCTTAACTTTGTAGGGAAGGCTCTTGTGGAAGATGTCATTTCAATCCTTATGGTTGCATACCATTGTCAATTGAATCAACTCGTTGCTCAATGTGTTGAAAGAGTGGCACGATCGGACCTTGACCAGATCTCAATCGAGAAAGAGCTTCCCTTTGAGCTCTCAGAAAAAGTTAAAGTGCTCCGTCGTGATCTTCACCAGGATGGGGAAAACGATACTCCTATAGTGGACGCTTTGTCTCTAAAACGAATCACTAGAATACATAAGGCATTGGACTCGGACGATGTCGAGCTTGTTAAACTTCTTTTAAACGAATCGGACATTACTTTAGACGAAGCTGGTGCCCTCCATTACGCAGCAGCCTACTGTGACCCTAAGGTTGTTTCTGAAGTACTTGGATTGGGTCTAGCTAATGTGAATCTTCGAAATTCTCGAGGGTACACAGTGCTTCATGTTGCTGCTATGCGTAAGGAGCCTTCGATTATAGTATCACTTCTTACAAAAGGGGCTTGTGCATCAGATTTGACTTTCGACGGTCAGAGTGCTGTTGGTATTTGTAGGAGGTTGACGAGGCCTAAGGATTATCACACAAAAACAGAACAAGGGAAAGAAACAAATAAAGACCGGATATGCATTGATGTTCTTGAAAGAGAAATGCGAAGGAATCCTTTGGCCGGAGATCCCTCTGTGTCTTCCCAAACAGTGGCTGATGATCTCCACATGAAGCTTCTGTACCTTGAGAACAGAGTGGCATTTGCAAGACTGTTCTTCCCTTTGGAAGCTAAATTAGCCATGGACATTGCTCGTGCGGAGACAACATCTGAGTTTGCCGGTCTTTCGGCATCGAAAGGTTCAAATGGTAACTTAAGAGAGGTTGATCTCAATGAGACTCCAATAATGCAAAACAAGAGACTTATTTCTAGGATGGAAGCCCTAATGAAAACAGTCGAGATGGGACGGCGCTACTTTCCTCATTGCTCCGAAGTGCTCGATAAGTTCATGGAAGATGACCTACCTGACTTGTTTTACCTCGAGAAGGGCACCCAAGAAGAGCAGAGAGTTAAGAGGACGCGATTCGTCGAGCTTAAAGACGACGTCAACAAGGCTTTCAACAAGGACAAGGCCGAGTTTACTCGCTCCGGAATTTCATCTTCATCATCCTCATCACCCCTTAGAGATTCTGTATATTTCAAGGCTAGAAGAATGTGA 1770 0.4192 MANSAEPSSSLSFTSSSHLSNGSISHNLCSSNGTDHARNLEVISLSKLSSNLEQLLIDSDYDYSDAEIVVEGISVRIHRCILGSRSKFFHELFKRGKDKVSSKNEGKLKYCLSDLLPYGKIGYEAFNIFLSYVYSGKLKPSPMEVSTCVDKVCAHDACGPAINFAVELMYASSIFQIPELVSLFQRRLLNFVGKALVEDVISILMVAYHCQLNQLVAQCVERVARSDLDQISIEKELPFELSEKVKVLRRDLHQDGENDTPIVDALSLKRITRIHKALDSDDVELVKLLLNESDITLDEAGALHYAAAYCDPKVVSEVLGLGLANVNLRNSRGYTVLHVAAMRKEPSIIVSLLTKGACASDLTFDGQSAVGICRRLTRPKDYHTKTEQGKETNKDRICIDVLEREMRRNPLAGDPSVSSQTVADDLHMKLLYLENRVAFARLFFPLEAKLAMDIARAETTSEFAGLSASKGSNGNLREVDLNETPIMQNKRLISRMEALMKTVEMGRRYFPHCSEVLDKFMEDDLPDLFYLEKGTQEEQRVKRTRFVELKDDVNKAFNKDKAEFTRSGISSSSSSSPLRDSVYFKARRM 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01339 589 SMART ANK_2a 298 328 IPR002110 GO:0005515
Trre3g01339 589 SMART ANK_2a 332 364 IPR002110 GO:0005515
Trre3g01339 589 SMART ANK_2a 269 297 IPR002110 GO:0005515
Trre3g01339 589 PANTHER REGULATORY PROTEIN NPR3 10 577 IPR044292 GO:0009862|GO:2000022|GO:2000031
Trre3g01339 589 SMART BTB_4 64 192 IPR000210 GO:0005515
Trre3g01339 589 FunFam Regulatory protein NPR3 38 224 - -
Trre3g01339 589 ProSiteProfiles BTB domain profile. 64 142 IPR000210 GO:0005515
Trre3g01339 589 Pfam BTB/POZ domain 62 181 IPR000210 GO:0005515
Trre3g01339 589 Gene3D - 266 406 IPR036770 -
Trre3g01339 589 ProSiteProfiles Ankyrin repeat profile. 332 357 IPR002110 GO:0005515
Trre3g01339 589 FunFam regulatory protein NPR3-like 266 406 - -
Trre3g01339 589 SUPERFAMILY POZ domain 50 190 IPR011333 -
Trre3g01339 589 CDD BTB_POZ_NPR_plant 47 192 - -
Trre3g01339 589 Gene3D Potassium Channel Kv1.1; Chain A 30 224 IPR011333 -
Trre3g01339 589 Pfam Domain of unknown function (DUF3420) 227 275 IPR024228 -
Trre3g01339 589 Pfam Ankyrin repeat 333 358 IPR002110 GO:0005515
Trre3g01339 589 Pfam NPR1/NIM1 like defence protein C terminal 374 576 IPR021094 -
Trre3g01339 589 SUPERFAMILY Ankyrin repeat 264 375 IPR036770 -
Trre3g01339 589 ProSiteProfiles Ankyrin repeat region circular profile. 332 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01339 Trre-Chr3 10125099 10128531 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Trre3g01339 NPR1_like_C 1.9e-96 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01339 K14508 - gmx:100217338 959.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g01339 3 10125099 10128531 Trre3g01339 3 10125099 10128531 ECH