Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01336 ATGGAATCCGGTGACGGTTACGGCGGAAGAAAAGAAACTCAACAACCTTCCGACGAGGTCAGTCTTCAACCAGAGTGGAGACGCCGAACTGCCTCCGCCGGAATAGAACAAAACCTTACTCTCCAACCAGAATGGAGACGAGGTAGGTCAACCGCTTCTCCTTCTCCTTCTCCTTCCGGTGCCGGCGATGAAGTTCAAAATAAAGAAGAACAGAAGAAAGAGGAGATTCTCTTTCAACCACAATGGAGAAGCTCAAAGGTGAATGCTAGTAGTGTTTGGGAACCAGAATGGAGACGATCAAGGTCTACTACTACTACTGCTACTGTTACTGCATATCCATGGAATCAAAATTATGGTGTGAAGAAACCGGTAGGATCGAGTTCTGGTGGTGTTCAAAGAGGTAGAAACATTGATGAATCGCGCCGAAATGATCCACCATTAGCAGATTACACCGTTCCCAAACTGGAAAGACTGCAAATATCGGACAACTTAGCTACATCATCTTGTTCACTTGAAAAAAAGGATAAAACTTTGCCTATTCGGAGACCTGACAATGGTGGCACGTTAGCGGTTCTTACACGCACACTCCGTGTCAATCATTTTCCTGTTAAGTTCAATCCAGATAGTATAATATTTCATTATAATGTTAATGTCAAATCGAAGTTTTCCTCAAAAGTTGGCCAGCCCCGTAAGTTATCTAATGCTGATCTGTCCATGATTAGAGAGAAATTGTTTTCTGATGATCCTGAGAGGTTTCCCTTGGATATGACTGCACATGACGGTGCAAAAAATATCTTTAGTGCAGTGCAGTTACCAGAAGAGACCATTAATGTGGAGATCTCTGAAGGAGAGGATGAAAAGATCACTTTATATAGTGTTACCCTGACACTTCTTAATAAACTCAGACTTTGCAAGTTAATGGACTATCTTTGTGGGCATTCATTCACTCTTCCCAGGGATATTTTACAAGGGATGGATGTGGTGATAAAAGAGAATCCCGCTAGGTGCACAATTTCTGTGGGACGATACTTCTATCCCACAAATCCTCCTCTGGTAATGAAGGAACTTCGCCCTGGAGTAATCGCTGTCGGGGGGTATCATCATAGTTTAAAACCTACATCTCAGGGTCTGTCCTTATGTGTAGACTACTCGGTGGTGCCTTTCCGAAAGCAAATGTCAGTCTTGGATTTCTTGCATGAGCGTATCGAAAACTTTAACTTGGGTGAATTTGAAAAATTCAGGAAATATGTTGAGGAGGTGCTTATTGGATTGAAAGTTAGCGTGACTCACCGTAAATCCCAACAGAAATATAGCATTGTACGATTAACACCTACAGCTACAAGGTATGTCACTTTCCCCATAGACCATACTAAGGGATGGAAACTTGAAAAGGAAGTCAGTCTTCTTAGCTTTTTTAATGACAAATATGATAAGGACATTGTATACAAAGATATTCCTTGTTTAGATTTAGGGAAAGGAAACAAGAAGAACTATGTACCCATGGAATTTTGTGTTTTAGCCGAGGGCCAAAGATATCCCAAGGAGCGTTTGGATGGTGTTTCTGCAAAGACATTGGAAGCAATGGCACTAGCTCACCCAAGCGAGAGGCAGGGTGCTATAGAGAAGATGGTGGAATCGAGTGATGGACCTTGCGGTGGTGATCATATTCAGAATTTTGGAATGAGAGTTAGCACGACCATGACAACCATTCTAGGACGTGTAATTGGCCCCCCAGAATTGAAGTTGGGTGATCGAAATGGCAAGAATATCAAGATAACAGTGGATCTAGATAAATGTCACTGGAACCTTGCTGGAAGATCAATGGTGGAAGGCAAACCAGTTGAGCATTGGGCCATTCTTGATTTCACCAGTGTTGGGCCGTATAATAAGAAATTAAGACGAAAGGAATTCGTTGAAAAACTTATTGGTAAATACAAAAAGTTGGGTATCTTTATGCAAGAGCCCATTTGGTATGAAGAATCTTCAATGAAGATACTTACAAGTCATGACTTGCTATCTGAATTACTTGAAAAAATCAACAACATTTGTAAATATAGCCAAGGTGGTCTACAATTTCTTCTGTGTGTGATGGCTTATAAAAATCCAGGTTACAAATACCTCAAGTGGATTTCTGAGACTAAAGTTGGTATAGTGACTCAATGTTGTTTGTCTCATAGTGCTAATCAAGGGGATGACAAATTCTATACTTATCTGGCTCTCAAGATCAATGCCAAGCTTGGAGGCAGTAATGTAGAGCTCAATAATAGGCTCCCTTACTTTGAGGGCGACGAACATGTTATGTTTATAGGGGCTGATGTCAATCACCCTGGTTTTCGAGACAACAAGAGTCCATCAATTGTTGCTGTGGTTGCAACGGTTAATTGGCCCGCTGCAAATCGTTATGCAGCACGTGTTTGTCCGCAATTCAATCGAAGTGAAAAAATATTAAACTTTGGGGAGATTTGCGTTGAGCTTGTTGGTTGTTATTGGAGGACAAATGGAGTCAGGCCAGAAAAAATTGTTGTTTTTCGTGATGGGGTGAGTGAGTACCAGTTTGACATGGTTCTTAATGAAGAGCTACTTGATTTGAAGAGAGCATTCCAAAGATTAAATTATTTCCCAACAATCACTCATATTGTAGCACAAAAACGACATCAAACTCGATTTTTTCCAGACAGTTGGAGGGACGGGTCTTCCAGTGGAAATATTTTACCGGGAACAGTTATTGACACAAAAGTTACACACCCCTTTGAGTTTGACTTTTACCTTTGTAGTTACTATGGAAGCCTAGGTACAAGCAAGCCCACTCATTACCATGTTTTATGGGATGAACACAAGTTTACATCTGATGAATTGCAGAAACTTATATATGAGATGTGCTTCACCTTTGCGAGGTGCACTAAACCTGTATCTTTAGTTCCTCCTGTGTATTATGCTGACCTTGCTGCTTATAGAGGACGATTATATCACGAAGCAAAGATTGGGATGCAACCTAAGAAGTCAAGAGCATCTTCATCTTCTAAAGATTCATCATCGGTTCCACCAACAGCTTCTTTTGAACAGGGATTTTACAGGTTGCATGCTGACCTGGAAAACATAATGTTCTTCATCTAA 3114 0.4098 MESGDGYGGRKETQQPSDEVSLQPEWRRRTASAGIEQNLTLQPEWRRGRSTASPSPSPSGAGDEVQNKEEQKKEEILFQPQWRSSKVNASSVWEPEWRRSRSTTTTATVTAYPWNQNYGVKKPVGSSSGGVQRGRNIDESRRNDPPLADYTVPKLERLQISDNLATSSCSLEKKDKTLPIRRPDNGGTLAVLTRTLRVNHFPVKFNPDSIIFHYNVNVKSKFSSKVGQPRKLSNADLSMIREKLFSDDPERFPLDMTAHDGAKNIFSAVQLPEETINVEISEGEDEKITLYSVTLTLLNKLRLCKLMDYLCGHSFTLPRDILQGMDVVIKENPARCTISVGRYFYPTNPPLVMKELRPGVIAVGGYHHSLKPTSQGLSLCVDYSVVPFRKQMSVLDFLHERIENFNLGEFEKFRKYVEEVLIGLKVSVTHRKSQQKYSIVRLTPTATRYVTFPIDHTKGWKLEKEVSLLSFFNDKYDKDIVYKDIPCLDLGKGNKKNYVPMEFCVLAEGQRYPKERLDGVSAKTLEAMALAHPSERQGAIEKMVESSDGPCGGDHIQNFGMRVSTTMTTILGRVIGPPELKLGDRNGKNIKITVDLDKCHWNLAGRSMVEGKPVEHWAILDFTSVGPYNKKLRRKEFVEKLIGKYKKLGIFMQEPIWYEESSMKILTSHDLLSELLEKINNICKYSQGGLQFLLCVMAYKNPGYKYLKWISETKVGIVTQCCLSHSANQGDDKFYTYLALKINAKLGGSNVELNNRLPYFEGDEHVMFIGADVNHPGFRDNKSPSIVAVVATVNWPAANRYAARVCPQFNRSEKILNFGEICVELVGCYWRTNGVRPEKIVVFRDGVSEYQFDMVLNEELLDLKRAFQRLNYFPTITHIVAQKRHQTRFFPDSWRDGSSSGNILPGTVIDTKVTHPFEFDFYLCSYYGSLGTSKPTHYHVLWDEHKFTSDELQKLIYEMCFTFARCTKPVSLVPPVYYADLAAYRGRLYHEAKIGMQPKKSRASSSSKDSSSVPPTASFEQGFYRLHADLENIMFFI 1037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01336 1037 MobiDBLite consensus disorder prediction 33 64 - -
Trre3g01336 1037 SUPERFAMILY PAZ domain 387 546 IPR036085 GO:0005515
Trre3g01336 1037 SMART PAZ_2_a_3 392 525 IPR003100 GO:0005515
Trre3g01336 1037 ProSiteProfiles PAZ domain profile. 392 508 IPR003100 GO:0005515
Trre3g01336 1037 MobiDBLite consensus disorder prediction 65 79 - -
Trre3g01336 1037 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 195 992 - -
Trre3g01336 1037 Gene3D - 761 1037 IPR036397 GO:0003676
Trre3g01336 1037 Pfam N-terminal domain of argonaute 195 329 IPR032474 -
Trre3g01336 1037 Pfam Piwi domain 693 987 IPR003165 GO:0003676
Trre3g01336 1037 MobiDBLite consensus disorder prediction 1 105 - -
Trre3g01336 1037 CDD PAZ_argonaute_like 392 507 - -
Trre3g01336 1037 Pfam PAZ domain 401 520 IPR003100 GO:0005515
Trre3g01336 1037 Gene3D - 574 755 - -
Trre3g01336 1037 MobiDBLite consensus disorder prediction 117 134 - -
Trre3g01336 1037 Gene3D paz domain 387 512 - -
Trre3g01336 1037 CDD Piwi_ago-like 555 989 IPR045246 -
Trre3g01336 1037 ProSiteProfiles Piwi domain profile. 692 991 IPR003165 GO:0003676
Trre3g01336 1037 SMART DUF1785_2 338 391 IPR014811 -
Trre3g01336 1037 MobiDBLite consensus disorder prediction 81 105 - -
Trre3g01336 1037 SUPERFAMILY Ribonuclease H-like 684 991 IPR012337 -
Trre3g01336 1037 SMART Piwi_a_2 692 990 IPR003165 GO:0003676
Trre3g01336 1037 MobiDBLite consensus disorder prediction 117 149 - -
Trre3g01336 1037 Pfam Argonaute linker 1 domain 339 390 IPR014811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01336 Trre-Chr3 10099516 10104582 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01336 196 1010 Eukaryotic Initiation Factors Gene Family AT1G48410 35.267 4.81e-141 448
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01336 K11593 - gmx:100783571 1536.93