Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01335 ATGGAATCCGGTGACGGTTACGGCGGAAGAAAAGAAACTCAACAACCTTCCGACGAGGTCAGTCTTCAACCAGAGTGGAGACGCCGAACTGCCTCCGCCGGAATAGAACAAAACCTTACTCTCCAACCAGAATGGAGACGAGGTAGGTCAACCGCTTCTCCTTCTCCTTCTCCTTCCGGTGCCGGCGATGAAGTTCAAAATAAAGAAGAACAGAAGAAAGAGGAGATTCTCTTTCAACCACAATGGAGAAGCTCAAAGGTGAATGCTAGTAGTGTTTGGGAACCAGAATGGAGACGATCAAGGTCTACTACTACTACTGCTACTGTTACTGCATATCCATGGAATCAAAATTATGGTGTGAAGAAACCGGTAGGATCGAGTTCTGGTGGTGTTCAAAGAGGTAGAAACATTGATGAATCGCGCCGAAATGATCCACCATTAGATTACACCGTTCCCAAACTGGAAAGACTGCAAATATCGGACAACTTAGCTACATCATCTTGTTCACTTGAAAAAAAGGATAAAACTTTGCCTATTCGGAGACCTGACAATGGTGGCACGTTAGCGGTTCTTACACGCACACTCCGTGTCAATCATTTTCCTGTTAAGTTCAATCCAGATAGTATAATATTTCATTATAATGTTAATGTCAAATCGAAGTTTTCCTCAAAAGTTGGCCAGCCCCGTAAGTTATCTAATGCTGATCTGTCCATGATTAGAGAGAAATTGTTTTCTGATGATCCTGAGAGGTTTCCCTTGGATATGACTGCACATGACGGTGCAAAAAATATCTTTAGTGCAGTGCAGTTACCAGAAGAGACCATTAATGTGGAGATCTCTGAAGGAGAGGATGAAAAGATCACTTTATATAGTGTTACCCTGACACTTCTTAATAAACTCAGACTTTGCAAGTTAATGGACTATCTTTGTGGGCATTCATTCACTCTTCCCAGGGATATTTTACAAGGGATGGATGTGGTGATAAAAGAGAATCCCGCTAGGTGCACAATTTCTGTGGGACGATACTTCTATCCCACAAATCCTCCTCTGGTAATGAAGGAACTTCGCCCTGGAGTAATCGCTGTCGGGGGGTATCATCATAGTTTAAAACCTACATCTCAGGGTCTGTCCTTATGTGTAGACTACTCGGTGGTGCCTTTCCGAAAGCAAATGTCAGTCTTGGATTTCTTGCATGAGCGTATCGAAAACTTTAACTTGGGTGAATTTGAAAAATTCAGGAAATATGTTGAGGAGGTGCTTATTGGATTGAAAGTTAGCGTGACTCACCGTAAATCCCAACAGAAATATAGCATTGTACGATTAACACCTACAGCTACAAGGTATGTCACTTTCCCCATAGACCATACTAAGGGATGGAAACTTGAAAAGGAAGTCAGTCTTCTTAGCTTTTTTAATGACAAATATGATAAGGACATTGTATACAAAGATATTCCTTGTTTAGATTTAGGGAAAGGAAACAAGAAGAACTATGTACCCATGGAATTTTGTGTTTTAGCCGAGGGCCAAAGATATCCCAAGGAGCGTTTGGATGGTGTTTCTGCAAAGACATTGGAAGCAATGGCACTAGCTCACCCAAGCGAGAGGCAGGGTGCTATAGAGAAGATGGTGGAATCGAGTGATGGACCTTGCGGTGGTGATCATATTCAGAATTTTGGAATGAGAGTTAGCACGACCATGACAACCATTCTAGGACGTGTAATTGGCCCCCCAGAATTGAAGTTGGGTGATCGAAATGGCAAGAATATCAAGATAACAGTGGATCTAGATAAATGTCACTGGAACCTTGCTGGAAGATCAATGGTGGAAGGCAAACCAGTTGAGCATTGGGCCATTCTTGATTTCACCAGTGTTGGGCCGTATAATAAGAAATTAAGACGAAAGGAATTCGTTGAAAAACTTATTGGTAAATACAAAAAGTTGGGTATCTTTATGCAAGAGCCCATTTGGTATGAAGAATCTTCAATGAAGATACTTACAAGTCATGACTTGCTATCTGAATTACTTGAAAAAATCAACAACATTTGTAAATATAGCCAAGGTGGTCTACAATTTCTTCTGTGTGTGATGGCTTATAAAAATCCAGGTTACAAATACCTCAAGTGGATTTCTGAGACTAAAGTTGGTATAGTGACTCAATGTTGTTTGTCTCATAGTGCTAATCAAGGGGATGACAAATTCTATACTTATCTGGCTCTCAAGATCAATGCCAAGCTTGGAGGCAGTAATGTAGAGCTCAATAATAGGCTCCCTTACTTTGAGGGCGACGAACATGTTATGTTTATAGGGGCTGATGTCAATCACCCTGGTTTTCGAGACAACAAGAGTCCATCAATTGTTGCTGTGGTTGCAACGGTTAATTGGCCCGCTGCAAATCGTTATGCAGCACGTGTTTGTCCGCAATTCAATCGAAGTGAAAAAATATTAAACTTTGGGGAGATTTGCGTTGAGCTTGTTGGTTGTTATTGGAGGACAAATGGAGTCAGGCCAGAAAAAATTGTTGTTTTTCGTGATGGGGTGAGTGAGTACCAGTTTGACATGGTTCTTAATGAAGAGCTACTTGATTTGAAGAGAGCATTCCAAAGATTAAATTATTTCCCAACAATCACTCATATTGTAGCACAAAAACGACATCAAACTCGATTTTTTCCAGACAGTTGGAGGGACGGGTCTTCCAGTGGAAATATTTTACCGGGAACAGTTATTGACACAAAAGTTACACACCCCTTTGAGTTTGACTTTTACCTTTGTAGTTACTATGGAAGCCTAGGTACAAGCAAGCCCACTCATTACCATGTTTTATGGGATGAACACAAGTTTACATCTGATGAATTGCAGAAACTTATATATGAGATGTGCTTCACCTTTGCGAGGTGCACTAAACCTGTATCTTTAGTTCCTCCTGTGTATTATGCTGACCTTGCTGCTTATAGAGGACGATTATATCACGAAGCAAAGATTGGGATGCAACCTAAGAAGTCAAGAGCATCTTCATCTTCTAAAGATTCATCATCGGTTCCACCAACAGCTTCTTTTGAACAGGGATTTTACAGGTTGCATGCTGACCTGGAAAACATAATGTTCTTCATCTAA 3111 0.4095 MESGDGYGGRKETQQPSDEVSLQPEWRRRTASAGIEQNLTLQPEWRRGRSTASPSPSPSGAGDEVQNKEEQKKEEILFQPQWRSSKVNASSVWEPEWRRSRSTTTTATVTAYPWNQNYGVKKPVGSSSGGVQRGRNIDESRRNDPPLDYTVPKLERLQISDNLATSSCSLEKKDKTLPIRRPDNGGTLAVLTRTLRVNHFPVKFNPDSIIFHYNVNVKSKFSSKVGQPRKLSNADLSMIREKLFSDDPERFPLDMTAHDGAKNIFSAVQLPEETINVEISEGEDEKITLYSVTLTLLNKLRLCKLMDYLCGHSFTLPRDILQGMDVVIKENPARCTISVGRYFYPTNPPLVMKELRPGVIAVGGYHHSLKPTSQGLSLCVDYSVVPFRKQMSVLDFLHERIENFNLGEFEKFRKYVEEVLIGLKVSVTHRKSQQKYSIVRLTPTATRYVTFPIDHTKGWKLEKEVSLLSFFNDKYDKDIVYKDIPCLDLGKGNKKNYVPMEFCVLAEGQRYPKERLDGVSAKTLEAMALAHPSERQGAIEKMVESSDGPCGGDHIQNFGMRVSTTMTTILGRVIGPPELKLGDRNGKNIKITVDLDKCHWNLAGRSMVEGKPVEHWAILDFTSVGPYNKKLRRKEFVEKLIGKYKKLGIFMQEPIWYEESSMKILTSHDLLSELLEKINNICKYSQGGLQFLLCVMAYKNPGYKYLKWISETKVGIVTQCCLSHSANQGDDKFYTYLALKINAKLGGSNVELNNRLPYFEGDEHVMFIGADVNHPGFRDNKSPSIVAVVATVNWPAANRYAARVCPQFNRSEKILNFGEICVELVGCYWRTNGVRPEKIVVFRDGVSEYQFDMVLNEELLDLKRAFQRLNYFPTITHIVAQKRHQTRFFPDSWRDGSSSGNILPGTVIDTKVTHPFEFDFYLCSYYGSLGTSKPTHYHVLWDEHKFTSDELQKLIYEMCFTFARCTKPVSLVPPVYYADLAAYRGRLYHEAKIGMQPKKSRASSSSKDSSSVPPTASFEQGFYRLHADLENIMFFI 1036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01335 1036 ProSiteProfiles Piwi domain profile. 691 990 IPR003165 GO:0003676
Trre3g01335 1036 MobiDBLite consensus disorder prediction 33 64 - -
Trre3g01335 1036 Gene3D - 760 1036 IPR036397 GO:0003676
Trre3g01335 1036 MobiDBLite consensus disorder prediction 1 81 - -
Trre3g01335 1036 MobiDBLite consensus disorder prediction 65 79 - -
Trre3g01335 1036 CDD PAZ_argonaute_like 391 506 - -
Trre3g01335 1036 Gene3D - 573 754 - -
Trre3g01335 1036 SMART Piwi_a_2 691 989 IPR003165 GO:0003676
Trre3g01335 1036 SMART DUF1785_2 337 390 IPR014811 -
Trre3g01335 1036 Pfam PAZ domain 400 519 IPR003100 GO:0005515
Trre3g01335 1036 SUPERFAMILY PAZ domain 386 545 IPR036085 GO:0005515
Trre3g01335 1036 ProSiteProfiles PAZ domain profile. 391 507 IPR003100 GO:0005515
Trre3g01335 1036 MobiDBLite consensus disorder prediction 117 134 - -
Trre3g01335 1036 Pfam Piwi domain 692 986 IPR003165 GO:0003676
Trre3g01335 1036 Pfam N-terminal domain of argonaute 194 328 IPR032474 -
Trre3g01335 1036 MobiDBLite consensus disorder prediction 135 149 - -
Trre3g01335 1036 SUPERFAMILY Ribonuclease H-like 683 990 IPR012337 -
Trre3g01335 1036 Gene3D paz domain 386 511 - -
Trre3g01335 1036 CDD Piwi_ago-like 554 988 IPR045246 -
Trre3g01335 1036 SMART PAZ_2_a_3 391 524 IPR003100 GO:0005515
Trre3g01335 1036 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 194 991 - -
Trre3g01335 1036 Pfam Argonaute linker 1 domain 338 389 IPR014811 -
Trre3g01335 1036 MobiDBLite consensus disorder prediction 117 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01335 Trre-Chr3 10099516 10104582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01335 195 1009 Eukaryotic Initiation Factors Gene Family AT1G48410 35.267 5.32e-141 448
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01335 K11593 - gmx:100783571 1532.31