Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01333 ATGGAAGATCAAGATTTTTTAGGTTATGAAGCATTTGTTAATGTTGAGGAAGAAGAAGAAGAAGAAGATGAGTTTTGCAGTTGTTGTGAAGATGAAGAAGAAAGAGAAGAACAAGATGAAGAAGAATGGAAAGAAACTGAAGAGAAAGTGGTGGAAAATTTGAAGGAAGAACTTGATGAATTTTCAGTGAAATTGTTCTTTAAAGGATTATCAATAACTGGAATTGAAAATTCAACTTCAGGTTTTTCAGGAATTGGAGTGTTTATGGAAAGATCATCAAAATTTTCTCCTATAAGGGTGCAAAAAAGACTTGATTTTTATGCTGAGGAACCTATGGTTGAATACTTAGCACTCGTGGATGGTTTACTTGAAGCTTTGCAGAACAAGATCCGTAGAGTTTATGCTTTCACAGATTCTGAGTTGTTGCATAAGATAACATTTGAGAAAAATTCAGACATGCCGCTGTTGATGGCATTGAGAGAAAGGATTCTAGAACATGCCAATAATTTTGAAACTTTTGATCTGAAGCTTATACCAAGCATTGATCTTGAGCAGCCACTGCAGTTGGCCAAAGTAGCTATGGGACTCGTCACTTTTCCCGTAACTGGCAAAACATCACTTGAGAATTGTTCTATTTGTTGCGACGACAAGCCAGTGCCAATGATGATTAGCTTGAAATGTTCACACACATTTTGTTCACACTGCTTGAGATCCTATGCTGACGGTAAGCTACAATGTTGTCAAGTCCCTATAAGATGTCCTCAACCCGGATGCAGATATTGTATCTCGTCACCTGAATGCAAGTCTTTTCTTCCATTCACCTCGTATGAATCTCTGGAGAAATCCCTTTCGGAAGCAAATATTATGCAGTCAGAAAGATTTTATTGTCCGTTTCCAAATTGTTCTGTTCTCCTCGATCCCTGTGAGTGTTTATCGGCAATGGACGGTTCATCCAGTCAGTCGGACAATTCTTGTATCGAGTGTCCTGTTTGTCAGAGGTTTATCTGCGTGGATTGTGGTGTTGCTTGGCATTCTTCCATGACTTGTGAAGAATACCAGAATTTGCCAGAGGAAGAGAGAGATGCTTCTGACATTACATTGCATCGTCTTGCTCAGAATAAAAGGTGGAAGCGTTGTCAGCAGTGTCGTAGAATGATTGAGCTTTCTCAAGGTTGTTACCACATGACATGCTGGTGTGGTCACGAGTTCTGCTATTCTTGCGGTGCGGAGTACAGAGACGGCCAACAAACATGTCAATGCGCATTTTGGGATGAAAACAGCTTGACAAACACCCTTCAAGAATCGGAACAATGGACATGGGAGACTTCTATGATCATGGATGCATACTCAGATCAAGAACGCTCACAACTCGCACTTATACAACGGTTCCTTGACGGCGGTTTTAGTCTCAGTGACCACAATCCCTACCAATCTCCTCCTCCTCAATGTACAGAATCCTTTGTAGACCCTTTGAAGGATCTTCATCAGCTTCCATGGCTAGAGAGATTTGTTTCTGTGATAAGTGACAACTACTATGAAGATTACATGCAATAA 1554 0.4035 MEDQDFLGYEAFVNVEEEEEEEDEFCSCCEDEEEREEQDEEEWKETEEKVVENLKEELDEFSVKLFFKGLSITGIENSTSGFSGIGVFMERSSKFSPIRVQKRLDFYAEEPMVEYLALVDGLLEALQNKIRRVYAFTDSELLHKITFEKNSDMPLLMALRERILEHANNFETFDLKLIPSIDLEQPLQLAKVAMGLVTFPVTGKTSLENCSICCDDKPVPMMISLKCSHTFCSHCLRSYADGKLQCCQVPIRCPQPGCRYCISSPECKSFLPFTSYESLEKSLSEANIMQSERFYCPFPNCSVLLDPCECLSAMDGSSSQSDNSCIECPVCQRFICVDCGVAWHSSMTCEEYQNLPEEERDASDITLHRLAQNKRWKRCQQCRRMIELSQGCYHMTCWCGHEFCYSCGAEYRDGQQTCQCAFWDENSLTNTLQESEQWTWETSMIMDAYSDQERSQLALIQRFLDGGFSLSDHNPYQSPPPQCTESFVDPLKDLHQLPWLERFVSVISDNYYEDYMQ 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01333 517 Coils Coil 29 64 - -
Trre3g01333 517 SUPERFAMILY RING/U-box 206 286 - -
Trre3g01333 517 ProSitePatterns Zinc finger RING-type signature. 227 236 IPR017907 -
Trre3g01333 517 FunFam RBR-type E3 ubiquitin transferase 205 290 - -
Trre3g01333 517 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 49 456 IPR031127 GO:0004842|GO:0016567
Trre3g01333 517 FunFam RBR-type E3 ubiquitin transferase 63 197 - -
Trre3g01333 517 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 289 IPR013083 -
Trre3g01333 517 Gene3D - 347 464 - -
Trre3g01333 517 Pfam IBR domain, a half RING-finger domain 369 418 IPR002867 GO:0008270
Trre3g01333 517 Pfam IBR domain, a half RING-finger domain 285 349 IPR002867 GO:0008270
Trre3g01333 517 Gene3D - 63 196 IPR036397 GO:0003676
Trre3g01333 517 SMART ibrneu5 277 349 IPR002867 GO:0008270
Trre3g01333 517 SMART ibrneu5 359 418 IPR002867 GO:0008270
Trre3g01333 517 FunFam RBR-type E3 ubiquitin transferase 347 462 - -
Trre3g01333 517 CDD Rcat_RBR_unk 375 411 - -
Trre3g01333 517 ProSiteProfiles Zinc finger RING-type profile. 210 254 IPR001841 -
Trre3g01333 517 Pfam Reverse transcriptase-like 81 179 IPR002156 GO:0003676|GO:0004523
Trre3g01333 517 ProSiteProfiles TRIAD supradomain profile. 206 424 IPR044066 -
Trre3g01333 517 SUPERFAMILY RING/U-box 362 426 - -
Trre3g01333 517 CDD BRcat_RBR_unk 291 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01333 Trre-Chr3 10087505 10092713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01333 62 409 C3H Transcription Factor Family AT2G19610 26.997 1.73e-30 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01333 - - tpra:123896818 974.156
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g01333 3 10087505 10092713 Trre3g01333 3 10087505 10092713 ECH