Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01324 ATGTCGGAGTTCCAGACCCAAAATCTTGTTACCGTCGACGCCGTCAATTCTCAACCTCCAAGTGCAGAACAAGAACAACACTTAAAGATGGACGATATTTCTCTGTGCTGCGATCAAATACCAGATGGAGAAGGCATTGAGATTCTAAAAGATGAAGATGATGTAGTAATTGAATTAGATTGTCAAAATGATCTTTCTGAAGGAGGAAAGGAATTTCTCCCTCCTGCTGTTGGAATGGAATTTGAGTCATATGATGATTCTTACAATTATTATATTTGTTATGCCAAGGAGGTGGGATTTTGTGTGAGGGTGAAGAATTCATGGTTCAAGAGAAATAGTAGAGAAAAATACGGTGCAGTGCTTTGCTGTAGCAGTCAGGGTTTCAAAAGAATGAAAGATGTTAACAATTTGAGAAAAGATACAAGAACTGGTTGTCCTGCGATGATAAGGATGAGGTTAGTGGAGTCTCAAAGATGGAGGATACGCGAGGTTACCCTCGAACATAACCACATCTTAGGTGCTAAGATACATAAATCAATTAAAAATATGGGAAGTGGAACTAAAAAGAAGTTGTTACCTAGTTGTTCTAATGCTGAGCTTTCTAGAATGTACACAAAAGAAATATTCACGAAGTTCCAATTTGAAGTGGGAGAAATGTTTTCATGTTTTGGTACGACTCAACTACACGTGGATGGTCCCATCATAATCTTCTTGGTCAAAGAGCGTGTTTTGATTGATGGAAACAGACGGGAGATTAGGGATTTCGAAGTTTTGTACAGTAGATCAGCAGGTGAAGTTCGTTGTATTTGTTGTTGCTTTAATTTTTATGGATATCTATGTCGACATGCACTGTGCGTACTCAATTTTAATGGGGTGGAAGAGATTCCTCCTAAGTACATTCTTTCACGGTGGAGAAAAGATTACAAACGTCTTTATATTCCTGATCAAAATTTTGGTAGTTCTGATGATACTGATCGTATTCACTGGTGTAATCAGTTATTTAGAAGTGCCTTACAAGTTGTAGAGGAAGGAGTACTTTCTGTAGACCATTACAATGTAGCGTTGCAGGCTTTTGAAGAATCATTTATTAAGGTCCGTGATGTAGAACAGAGACATGAGTAA 1122 0.3797 MSEFQTQNLVTVDAVNSQPPSAEQEQHLKMDDISLCCDQIPDGEGIEILKDEDDVVIELDCQNDLSEGGKEFLPPAVGMEFESYDDSYNYYICYAKEVGFCVRVKNSWFKRNSREKYGAVLCCSSQGFKRMKDVNNLRKDTRTGCPAMIRMRLVESQRWRIREVTLEHNHILGAKIHKSIKNMGSGTKKKLLPSCSNAELSRMYTKEIFTKFQFEVGEMFSCFGTTQLHVDGPIIIFLVKERVLIDGNRREIRDFEVLYSRSAGEVRCICCCFNFYGYLCRHALCVLNFNGVEEIPPKYILSRWRKDYKRLYIPDQNFGSSDDTDRIHWCNQLFRSALQVVEEGVLSVDHYNVALQAFEESFIKVRDVEQRHE 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01324 373 ProSiteProfiles Zinc finger SWIM-type profile. 255 291 IPR007527 GO:0008270
Trre3g01324 373 Coils Coil 365 373 - -
Trre3g01324 373 Pfam FAR1 DNA-binding domain 89 172 IPR004330 -
Trre3g01324 373 SMART 26again6 266 293 IPR006564 GO:0008270
Trre3g01324 373 Pfam SWIM zinc finger 245 287 IPR007527 GO:0008270
Trre3g01324 373 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 64 184 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01324 Trre-Chr3 10009703 10013348 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre3g01324 FAR1 1e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01324 - K17604 gmx:100796448 307.375