Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01320 ATGGCAAACCAAAACAGAGAAGAAGAAGAAGAACTAGTTTGCGTAACCGGAGCAAACGGTTTCATCGGAACATGGCTAGTTAAAACCCTACTCCAAAAACACTACAAAATTCACGCCACAATCTTCCCCAATTCCGACGCATCTCATCTCTTCACACTCCACCCGGAAGCTCAATCCCGGATCACAATTTTCCCTGTCAACATCCTCGACTCCACCGCCGTCTCTTCCGCCATCAATAACTGCTCCGGTGTCTTTCATGTCGCTTCTCCATGTACCCTCGAAGATCCAACTGATCCACAAAAAGAGCTTCTAGAACCTGCTGTACAAGGAACCCTAAATGTTCTAGAAGCATCCAAGCGCGCAGGTGTAAAGCGTGTGGTTCTCACTTCATCGATTTCGGCAATGGTACCAAACCCTAATTGGCCGGAGAAAAAGGCGATCGATGAGGCGTCGTGGACGGATGTTGAGTACTGTAAATTGAGAGGGAAGTGGTATCCGGTGTCGAAAACGGAGGCGGAGAAGGCGGCTTGGGATTTTCGAGAGAAAAATGGTGGTGTTGATGTGGTGGCGGTTCATCCGGGGACTTGTTTGGGAGAGTTGATACAGAAGGAGTTGAATGCGAGTTCAGCGGTTTTACAGAGGTTGATGATGGGGAGTGAGGATACTCAAGAGTGTTATTGGTTGGGGGCTGTTCATGTTAAAGATGTTGCTAGAGCTCATGTTTTGGTTTATGAAACTCCAACTGCTGCTGGTAGATATCTTTGTGTTAATGGGATATATCAGTTTTCTAGTTTTGCTAAAATTGTCTCTGAATTGTATCCTGATTTTTCTATTCACAGTTTTCCAGATGAAACTCAACCTGGTTTGACACCATGTAAAGATGCAGCAAGGAGGCTAATAGATTTGGGATTAGTCTTCACACCAATTCAAGATGCTATTAAAGAAGCAGCAGAAAGCCTTATGGCTAAAGGCTTCCTGCAGAAAACACCCTCACAGAATTAG 1002 0.4521 MANQNREEEEELVCVTGANGFIGTWLVKTLLQKHYKIHATIFPNSDASHLFTLHPEAQSRITIFPVNILDSTAVSSAINNCSGVFHVASPCTLEDPTDPQKELLEPAVQGTLNVLEASKRAGVKRVVLTSSISAMVPNPNWPEKKAIDEASWTDVEYCKLRGKWYPVSKTEAEKAAWDFREKNGGVDVVAVHPGTCLGELIQKELNASSAVLQRLMMGSEDTQECYWLGAVHVKDVARAHVLVYETPTAAGRYLCVNGIYQFSSFAKIVSELYPDFSIHSFPDETQPGLTPCKDAARRLIDLGLVFTPIQDAIKEAAESLMAKGFLQKTPSQN 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01320 333 Gene3D - 2 333 - -
Trre3g01320 333 CDD FR_SDR_e 13 304 - -
Trre3g01320 333 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 10 315 - -
Trre3g01320 333 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 12 319 IPR036291 -
Trre3g01320 333 FunFam Cinnamoyl-CoA reductase 1 6 333 - -
Trre3g01320 333 Pfam NAD dependent epimerase/dehydratase family 13 249 IPR001509 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01320 Trre-Chr3 9979783 9983555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01320 10 326 Monolignol Biosynthesis Gene Families AT2G02400 63.836 2.31e-158 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01320 - - gmx:100795399 509.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g01320 3 9979783 9983555 Trre3g01320 3 9979783 9983555 ECH