Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01318 ATGGGTGCAAGATTTATAGTGTTTCTACTCTTTCTTTTCAGTTATTTGTTGGTTCTTGTGGTAACAAAAACATCATCTAATGATTACAATGCACTTATGCTTATAAAGTATGATTGGAAGAATACACCGCCAAGTTGGGATAACTCGGATGATCCTTGTGGCGGACATTGGGACGGCATTGTGTGCAAAAATTCACGTGTTACCGCCATATCATTGGTAAGCATGGATTTGTTTGGCCAGCTTTCATCAGAGATTGGATCATTATCTGAATTGCAGATTTTGGATTTGTCCTACAATCAGAATTTAACAGGACCGCTTCCCGCTGAAATCGGAAACTTGAAAAAGCTGACAAACTTACAGCTTATTAGTTGCGGTTTCTTCGGTCCTATCCCAGATACAATAGGAAATCTACCGCGGCTCGTATTCCTATCTTTGAATTCTAATAGATTTAGTGGACCAATTCCAGCTACTATTGGCAATCTCTCGAATCTTTATTGGTTAGACTTAGCAGAAAACCAGCTCGAGGGTTCCATCCCAATATCTAATGGATCAACTCCCGGTCTTGATATGCTGCAGAAAACGAAACACTTTCATTTTGGGCAGAATAAGCTTTCTGGCGATATTCCAGCTCAACTTTTTAGCTCTAATATGTCTTTGGTACATATACTTTTCGAAAGCAACAAATTTACCGGCAGCATTCCATCTACACTTGGACTTGTACAGAAACTGGAAGTGGTGCGCTTGGATGACAATTCATTAACTGGACCTGTGCCTCAAAACATCAACAATCTTACAAAAGTTAGAGAATTGTTCCTGTCACACAATCGCCTATCCGGTTCCCTACCAAACCTTACTGGAATGAATGTCCTCAGCTACCTGGATTTGAGCAAAAACGCTTTCGATCAATCAGACTTTCCACCATGGTTATCTACTCTACAGTCTCTAACAACAATAATGATGGAGGATATACAACTTCAAGGACCAATTCCTGTTTCTTTGTTCAACCTGGTACAGTTACAGACAGTGATTCTGAAGAACAACCTGCTGATCAATGGAACTTTAGAAATTGGCTCTACATTTAGTGACCAACTTAGACTCATTGATTTGCAGTTTAATCATATTGAAGATGTTAATTTTGATCCACAATTTAATGTCTCTAAAGTGGACATAATACTAATGAATAATCCAGTTTGCACCGGCACAGGAGTTGTAGAGAGTTACTGCTCGATTACAAAACCGAATGACACTTATACAACGCCGCTAGATAACTGTATTCCGGTTGAATGCAACTCGAATCAGATATTAAGTCCGAAGTGTAAATGTGCATACCCATATACAGGAACTTTAACTCTTCGAGCTCCGTCTTTCTCTGACTTGAGCAACAAGACAGTGTTTGTAATGCTAGAGAAGACTCTGATGGAGTCTTTAATAAGCCATGATAAACCTGTGGACTCGGTTTCATTAAGCAATCCGAGGAAAAGTACCGAACAGTATCTTGATTTGAGTTTAGAAATATTTCCATCAGACGTAGATTCTTTCAATAGAACCGGTATTTCTGGCATAGGCTTTATGCTTAGCAACCAAACATACAAGCCTCCTGGTGATGTTTTCGGACCATTTTATTTCATCGCTGATAAGTATGAACACTATCTTGATGATTCAGTACTAGTAAAAGGTCCTGTGAAATCTAGTAAATCTTCAAATATCGGCATCATAGCTGGAGCCGCTATCGGTGGTTGTGTCCTTTTTTTTTTATTACTCCTTGCAGTTGTTTACGGTTTCCGCCAAAAGAACAAGGCAAGAAGAGCAACTAAGAAAAGTAATCTTTATGAACATTGGGGTCCTGATGAGAGCAGTAGTAGCATCCCACAGTTAAAAGGTGCAAGGCGCTTCACTTTCGAAGAGATTCAGAACTGCACTAAAAAATTCTCACAACTCAATTATATCGGATCTGGAGGTTATGGCAAGGTTTATAGGGGAACTCTTTACAACGGACAACTAGTTGCCGTAAAACGAGCTCAAAATGACTCAATGCAAGGAGGGCTAGAATTCAAAACTGAGATTGAACTTCTATCAAGGGTTCACCATAAAAATCTTGTTAGTCTTATCGGTTTCTGCTTTGAGCAAGGAGAACAAATATTGGTTTATGAGTATGTTGTCAATGGTACTTTGACAGATGCTCTTTCAGGGAAATCAGGAATTAGATTGGACTGGATTAGAAGGCTAAAAATAGCCCTTGGTACTGCTAGGGGGTTGGATTATCTTCATGAACAAGCTAATCCTCCTATCATACATAGAGACGTCAAATCGACAAACATTTTACTCGACGAACGCTTGAACGCTAAAGTATCTGATTTTGGTCTCTCCAAGCCTTTGAGTGATGGCGCAAAAGGTTATATGACCACTCAAGTTAAAGGGACAATGGGCTACTTGGATCCAGAATATTATATGACACAACAATTGACAGAAAAGAGTGATGTTTATAGCTTTGGAGTGTTAATGCTTGAGTTGATAACTGCAAGAAGGCCAATAGAAAGAGGGAAATATATTGTGAAAGTGGTTAAGAATTCTCTTGACAAGACAAAAGAATTATATGGTCTTAAAGAAATCATTGATCCTATCATTGATTTCAAGGCATCATTGAACAGTTTTGAAAAATTTATCGATCTTACAATAAAATGCGTTGATGAATCAAGTTCAAATAGGCCTTCAATGAATCACGCGTTTAAAGAAATTGAAAACATGTTACTGTTGGCTGGTACAAACCCGAATGATGTATCGGCATCATCTAGTTATAATGCAAGTGGAAGTTCTATGCATCCTTATGATAATGAGTACTTTGATTCAAGTGTGGTACTTCCACGTGCGTAA 2871 0.3859 MGARFIVFLLFLFSYLLVLVVTKTSSNDYNALMLIKYDWKNTPPSWDNSDDPCGGHWDGIVCKNSRVTAISLVSMDLFGQLSSEIGSLSELQILDLSYNQNLTGPLPAEIGNLKKLTNLQLISCGFFGPIPDTIGNLPRLVFLSLNSNRFSGPIPATIGNLSNLYWLDLAENQLEGSIPISNGSTPGLDMLQKTKHFHFGQNKLSGDIPAQLFSSNMSLVHILFESNKFTGSIPSTLGLVQKLEVVRLDDNSLTGPVPQNINNLTKVRELFLSHNRLSGSLPNLTGMNVLSYLDLSKNAFDQSDFPPWLSTLQSLTTIMMEDIQLQGPIPVSLFNLVQLQTVILKNNLLINGTLEIGSTFSDQLRLIDLQFNHIEDVNFDPQFNVSKVDIILMNNPVCTGTGVVESYCSITKPNDTYTTPLDNCIPVECNSNQILSPKCKCAYPYTGTLTLRAPSFSDLSNKTVFVMLEKTLMESLISHDKPVDSVSLSNPRKSTEQYLDLSLEIFPSDVDSFNRTGISGIGFMLSNQTYKPPGDVFGPFYFIADKYEHYLDDSVLVKGPVKSSKSSNIGIIAGAAIGGCVLFFLLLLAVVYGFRQKNKARRATKKSNLYEHWGPDESSSSIPQLKGARRFTFEEIQNCTKKFSQLNYIGSGGYGKVYRGTLYNGQLVAVKRAQNDSMQGGLEFKTEIELLSRVHHKNLVSLIGFCFEQGEQILVYEYVVNGTLTDALSGKSGIRLDWIRRLKIALGTARGLDYLHEQANPPIIHRDVKSTNILLDERLNAKVSDFGLSKPLSDGAKGYMTTQVKGTMGYLDPEYYMTQQLTEKSDVYSFGVLMLELITARRPIERGKYIVKVVKNSLDKTKELYGLKEIIDPIIDFKASLNSFEKFIDLTIKCVDESSSNRPSMNHAFKEIENMLLLAGTNPNDVSASSSYNASGSSMHPYDNEYFDSSVVLPRA 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01318 956 ProSiteProfiles Leucine-rich repeat profile. 266 288 IPR001611 GO:0005515
Trre3g01318 956 Gene3D Transferase(Phosphotransferase) domain 1 719 927 - -
Trre3g01318 956 PANTHER RECEPTOR-LIKE PROTEIN 55 39 915 - -
Trre3g01318 956 ProSiteProfiles Protein kinase domain profile. 643 917 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g01318 956 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 719 928 - -
Trre3g01318 956 Gene3D Ribonuclease Inhibitor 286 387 IPR032675 -
Trre3g01318 956 Pfam Protein kinase domain 644 910 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g01318 956 SUPERFAMILY Protein kinase-like (PK-like) 614 910 IPR011009 -
Trre3g01318 956 FunFam Leucine-rich repeat protein kinase family protein 609 718 - -
Trre3g01318 956 FunFam Leucine-rich repeat family protein 27 183 - -
Trre3g01318 956 SUPERFAMILY L domain-like 47 429 - -
Trre3g01318 956 FunFam Leucine-rich repeat protein kinase family protein 184 283 - -
Trre3g01318 956 ProSitePatterns Serine/Threonine protein kinases active-site signature. 763 775 IPR008271 GO:0004672|GO:0006468
Trre3g01318 956 Gene3D Ribonuclease Inhibitor 183 285 IPR032675 -
Trre3g01318 956 Gene3D Ribonuclease Inhibitor 25 182 IPR032675 -
Trre3g01318 956 ProSitePatterns Protein kinases ATP-binding region signature. 649 671 IPR017441 GO:0005524
Trre3g01318 956 Gene3D Phosphorylase Kinase; domain 1 615 718 - -
Trre3g01318 956 SMART serkin_6 643 918 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g01318 956 CDD STKc_IRAK 649 915 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01318 Trre-Chr3 9971519 9976588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01318 8 956 Receptor kinase-like Gene Family AT5G49760 55.079 0.0 966
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Trre3g01318 Pkinase 1.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01318 - - gmx:100782366 1377.46