Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01279 ATGGATCCTGGCAATGGAGGAAACAGTCTCGGCAACAACTCTAATCTCAACTCAAAACAACGTTTGCGCTGGACACATGAGTTACATGAACGCTTTGTTGATGCTGTGGCTCAACTTGGTGGGCCAGATCGTGCCACACCCAAAGGTGTCCTCAGAGTTATGGGTGTACAAGGCTTAACCATTTACCATGTTAAGAGCCATTTGCAGAAATACCGACTAGCAAAATACTTACCTGACTCCTCATCTGATGAAGGGAAAAAGGCTGACAAGAAAGAAACAGGGGATACACTTTCCAATCTAGATGGTTCATCGGGGATGCAGATTACTGAAGCACTAAAGCTTCAAATGGAGGTGCAGAAGCGACTTCATGAACAATTGGAGGTGCAGAGACAGCTACAACTAAGGATAGAAGCTCAAGGAAAATATTTGAAAAAGATAATTGAAGAGCAACAGCGACTCAGCGGGATTGTTTCAGAAGCACCCGGCTCTGGTGTTGCAGCACCAACTCCAGGAGATATGTGCCAACAAGAGCTCGACAATAAGACTGAACCGGCAACCCCCGACCCAGAAAAAGCTGCTAAAGAACATGCACCAGCAAAGAGTCTTTCAGTTGAATCTTTCTCATCTCACCACGAACCGATGACACCGGATTCCGGTTGCCAAGTTGGTTCTCCTGCTGACAGCGCTAATGGAGAGCGTTCAACTAAAAAGCAACGAGTAAGCGTGGAAGGAGCGTATTCGAAATCAGACATGGTGCTTCCACATCAGATACTTGAGTCAAGCATACCATCATACCAGCAACAGACCGCTGTTTTCCTTACTCATGATCACTTTGATCCGTCTTTAGGTATGTCTACAAGAAGTGGTGAGGAATTCGACAAGCTTGGTGTCGGGAATATGTGA 903 0.4596 MDPGNGGNSLGNNSNLNSKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDEGKKADKKETGDTLSNLDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRLSGIVSEAPGSGVAAPTPGDMCQQELDNKTEPATPDPEKAAKEHAPAKSLSVESFSSHHEPMTPDSGCQVGSPADSANGERSTKKQRVSVEGAYSKSDMVLPHQILESSIPSYQQQTAVFLTHDHFDPSLGMSTRSGEEFDKLGVGNM 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01279 300 Coils Coil 109 129 - -
Trre3g01279 300 SUPERFAMILY Homeodomain-like 18 73 IPR009057 -
Trre3g01279 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 76 IPR017930 -
Trre3g01279 300 Pfam Myb-like DNA-binding domain 22 72 IPR001005 -
Trre3g01279 300 MobiDBLite consensus disorder prediction 159 243 - -
Trre3g01279 300 MobiDBLite consensus disorder prediction 202 231 - -
Trre3g01279 300 MobiDBLite consensus disorder prediction 183 198 - -
Trre3g01279 300 FunFam Myb family transcription factor 18 76 - -
Trre3g01279 300 MobiDBLite consensus disorder prediction 78 96 - -
Trre3g01279 300 Pfam MYB-CC type transfactor, LHEQLE motif 106 152 IPR025756 -
Trre3g01279 300 Gene3D - 18 77 - -
Trre3g01279 300 NCBIfam myb-like DNA-binding domain, SHAQKYF class 19 74 IPR006447 GO:0003677
Trre3g01279 300 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 17 286 IPR044848 GO:0003700
Trre3g01279 300 MobiDBLite consensus disorder prediction 78 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01279 Trre-Chr3 9672647 9674571 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01279 54 300 G2-like Transcription Factor Family AT2G01060 60.000 1.17e-87 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre3g01279 Myb_DNA-binding 1.9e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01279 - - gmx:100784511 480.715