Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01278 ATGTATCATCCAACGAATGTTCCTGATTCGAGTTTAATTGGAAGCAATTCATTAGTTCATGGTCAGCACATAGATTCTGGTAGGAGCGCAATGGATCCTGGCAATGGAGGAAACAGTCTCGGCAACAACTCTAATCTCAACTCAAAACAACGTTTGCGCTGGACACATGAGTTACATGAACGCTTTGTTGATGCTGTGGCTCAACTTGGTGGGCCAGATCGTGCCACACCCAAAGGTGTCCTCAGAGTTATGGGTGTACAAGGCTTAACCATTTACCATGTTAAGAGCCATTTGCAGAAATACCGACTAGCAAAATACTTACCTGACTCCTCATCTGATGAAGGGAAAAAGGCTGACAAGAAAGAAACAGGGGATACACTTTCCAATCTAGATGGTTCATCGGGGATGCAGATTACTGAAGCACTAAAGCTTCAAATGGAGGTGCAGAAGCGACTTCATGAACAATTGGAGGTGCAGAGACAGCTACAACTAAGGATAGAAGCTCAAGGAAAATATTTGAAAAAGATAATTGAAGAGCAACAGCGACTCAGCGGGATTGTTTCAGAAGCACCCGGCTCTGGTGTTGCAGCACCAACTCCAGGAGATATGTGCCAACAAGAGCTCGACAATAAGACTGAACCGGCAACCCCCGACCCAGAAAAAGCTGCTAAAGAACATGCACCAGCAAAGAGTCTTTCAGTTGAATCTTTCTCATCTCACCACGAACCGATGACACCGGATTCCGGTTGCCAAGTTGGTTCTCCTGCTGACAGCGCTAATGGAGAGCGTTCAACTAAAAAGCAACGAGTAAGCGTGGAAGGAGCGTATTCGAAATCAGACATGGTGCTTCCACATCAGATACTTGAGTCAAGCATACCATCATACCAGCAACAGACCGCTGTTTTCCTTACTCATGATCACTTTGATCCGTCTTTAGGTATGTCTACAAGAAGTGGTGAGGAATTCGACAAGCTTGGTGTCGGGAATATGTGA 993 0.4542 MYHPTNVPDSSLIGSNSLVHGQHIDSGRSAMDPGNGGNSLGNNSNLNSKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDEGKKADKKETGDTLSNLDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRLSGIVSEAPGSGVAAPTPGDMCQQELDNKTEPATPDPEKAAKEHAPAKSLSVESFSSHHEPMTPDSGCQVGSPADSANGERSTKKQRVSVEGAYSKSDMVLPHQILESSIPSYQQQTAVFLTHDHFDPSLGMSTRSGEEFDKLGVGNM 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01278 330 MobiDBLite consensus disorder prediction 108 126 - -
Trre3g01278 330 MobiDBLite consensus disorder prediction 108 133 - -
Trre3g01278 330 MobiDBLite consensus disorder prediction 1 46 - -
Trre3g01278 330 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 45 316 IPR044848 GO:0003700
Trre3g01278 330 Pfam Myb-like DNA-binding domain 52 102 IPR001005 -
Trre3g01278 330 SUPERFAMILY Homeodomain-like 48 103 IPR009057 -
Trre3g01278 330 Coils Coil 139 159 - -
Trre3g01278 330 FunFam Myb family transcription factor 48 106 - -
Trre3g01278 330 Gene3D - 48 107 - -
Trre3g01278 330 NCBIfam myb-like DNA-binding domain, SHAQKYF class 49 104 IPR006447 GO:0003677
Trre3g01278 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 46 106 IPR017930 -
Trre3g01278 330 MobiDBLite consensus disorder prediction 189 273 - -
Trre3g01278 330 MobiDBLite consensus disorder prediction 213 228 - -
Trre3g01278 330 MobiDBLite consensus disorder prediction 1 23 - -
Trre3g01278 330 Pfam MYB-CC type transfactor, LHEQLE motif 136 182 IPR025756 -
Trre3g01278 330 MobiDBLite consensus disorder prediction 232 261 - -
Trre3g01278 330 MobiDBLite consensus disorder prediction 32 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01278 Trre-Chr3 9672557 9674571 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01278 84 330 G2-like Transcription Factor Family AT2G01060 60.000 3.30e-87 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre3g01278 Myb_DNA-binding 2.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01278 - - gmx:100786925 511.146