Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01277 ATGCAGAAACCTCGGCATGTGAAGCAACATTGTATCCCCAAGGTTCTTGAAGGCCGTCATGTAATTTGTATTCATCACTCTGGTAGCGGTAAAACAGTGGCGTTTGCGCTTCCTTTTCTCCAGCGTCTTGCTGAGCATCCATTTGGTGTTTTTGCTCTGCCGTGGTCTGATATTCCTAAACTTGACTTGTTAATTGTTATCAATTATGATGTTCCAAGGGTTCCACAAGATTATATCCATCGTGTAAGCGGTAGAGGGGGATTCGCTTTGAACCTTGTCACGCAGGTAGGCATAGCATTATCAACAACAGATGATGGATGA 321 0.4393 MQKPRHVKQHCIPKVLEGRHVICIHHSGSGKTVAFALPFLQRLAEHPFGVFALPWSDIPKLDLLIVINYDVPRVPQDYIHRVSGRGGFALNLVTQVGIALSTTDDG 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01277 106 Gene3D - 1 70 IPR027417 -
Trre3g01277 106 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 86 IPR027417 -
Trre3g01277 106 Pfam DEAD/DEAH box helicase 7 46 IPR011545 GO:0003676|GO:0005524
Trre3g01277 106 PANTHER RNA HELICASE 2 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01277 Trre-Chr3 9664584 9665537 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01277 2 53 Eukaryotic Initiation Factors Gene Family AT5G11200 42.308 1.15e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01277 K14778 - gmx:100798597 82.8037