Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01276 ATGTATCCTAGATTGATACACCCTCATGAAGGTATTGTTGTTGGACAAGATGATTTGCAAGGTGGTGGTGTTGTTGGTGGTGGTGTCTCTAATCATAAGGGTGACCCTTGTCTTGTTTTAACTGCTGATCCAAAACCTCGTCTTCGTTGGACTCAAGACCTTCATGAACGTTTTGTTGATGCTGTTACTCAGCTTGGAGGTCCTAGTAAAGCTACACCAAAAGCAATCATGCGGACCATGAACGTCAAGGGTTTGACTCTATTTCATTTAAAGAGTCATCTTCAGAAATACAGACTCGGTAAGCAATCCGGAAAAGATATAGGGGAGGGATGCAAAGATGGTTCCTATCTTTTAGAAAGCCCCGGCACTGATAACTCTTCTCCAAAGTTGCCGACTTCTGACACAAACGAGGGTTATGAAATCAAGGAGGCACTAAGAGCACAGATGGAGGTGCAAAGTAAACTACATTTGCAAGTCGAGGCAGAGAAGCACTTGCAGATTCGTCAGGATGCGGAGCGAAGATACATGGCTATGCTTGAAAGAGCATGCAAGATGTTGGCTGATCAATTTATCGGTGCTACAGTTATAGACACAGACAGCCAAAAGTTCCAAGGAATTGAGAATAAACCACCAAGAGGTTCCTTGGTTGACCATCTTGGTTTTTACTCCTTGCCACCATCTACTGAGGTAGCCGGAGTGAATGTTCCGGAAGAAGAAATACCTCCAACTCTCCCACCTCAAAGAGCCGATTGTTCAACCGAAAGTTGTTTAACCTCACATGAGAGCTCTGGAGGATTGGCTTTAGAAGGATCTCCAAGTGCCGGAAAACGGAGAATGCTCGGCATGGACTCAATGACAGCACCTTTGATTTGGAGTGAAGCTAAGATGAAAACTCAAGCCATTAATTTAGGTCAAGGTAATCATCCTCTTGGAATAACTAGGTATGGTGGCTTGTAA 957 0.441 MYPRLIHPHEGIVVGQDDLQGGGVVGGGVSNHKGDPCLVLTADPKPRLRWTQDLHERFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQSGKDIGEGCKDGSYLLESPGTDNSSPKLPTSDTNEGYEIKEALRAQMEVQSKLHLQVEAEKHLQIRQDAERRYMAMLERACKMLADQFIGATVIDTDSQKFQGIENKPPRGSLVDHLGFYSLPPSTEVAGVNVPEEEIPPTLPPQRADCSTESCLTSHESSGGLALEGSPSAGKRRMLGMDSMTAPLIWSEAKMKTQAINLGQGNHPLGITRYGGL 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01276 318 Pfam Myb-like DNA-binding domain 48 98 IPR001005 -
Trre3g01276 318 Pfam MYB-CC type transfactor, LHEQLE motif 140 185 IPR025756 -
Trre3g01276 318 MobiDBLite consensus disorder prediction 240 277 - -
Trre3g01276 318 MobiDBLite consensus disorder prediction 112 135 - -
Trre3g01276 318 FunFam Myb family transcription factor 44 102 - -
Trre3g01276 318 NCBIfam myb-like DNA-binding domain, SHAQKYF class 45 100 IPR006447 GO:0003677
Trre3g01276 318 MobiDBLite consensus disorder prediction 248 266 - -
Trre3g01276 318 Gene3D - 44 102 - -
Trre3g01276 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 42 102 IPR017930 -
Trre3g01276 318 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 26 269 IPR044848 GO:0003700
Trre3g01276 318 MobiDBLite consensus disorder prediction 119 134 - -
Trre3g01276 318 SUPERFAMILY Homeodomain-like 45 101 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01276 Trre-Chr3 9658102 9661944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01276 22 259 G2-like Transcription Factor Family AT3G24120 46.304 1.15e-64 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre3g01276 Myb_DNA-binding 3.3e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01276 - - gmx:100782369 547.354