Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01275 ATGTATCCTAGATTGATACACCCTCATGAAGGTATTGTTGTTGGACAAGATGATTTGCAAGGTGGTGGTGTTGTTGGTGGTGGTGTCTCTAATCATAAGGGTGACCCTTGTCTTGTTTTAACTGCTGATCCAAAACCTCGTCTTCGTTGGACTCAAGACCTTCATGAACGTTTTGTTGATGCTGTTACTCAGCTTGGAGGTCCTAGTAAAGCTACACCAAAAGCAATCATGCGGACCATGAACGTCAAGGGTTTGACTCTATTTCATTTAAAGAGTCATCTTCAGAAATACAGACTCGGTAAGCAATCCGGAAAAGATATAGGGGAGGGATGCAAAGATGGGATGACAGGTTCCTATCTTTTAGAAAGCCCCGGCACTGATAACTCTTCTCCAAAGTTGCCGACTTCTGACACAAACGAGGGTTATGAAATCAAGGAGGCACTAAGAGCACAGATGGAGGTGCAAAGTAAACTACATTTGCAAGTCGAGGCAGAGAAGCACTTGCAGATTCGTCAGGATGCGGAGCGAAGATACATGGCTATGCTTGAAAGAGCATGCAAGATGTTGGCTGATCAATTTATCGGTGCTACAGTTATAGACACAGACAGCCAAAAGTTCCAAGGAATTGAGAATAAACCACCAAGAGGTTCCTTGGTTGACCATCTTGGTTTTTACTCCTTGCCACCATCTACTGAGGTAGCCGGAGTGAATGTTCCGGAAGAAGAAATACCTCCAACTCTCCCACCTCAAAGAGCCGATTGTTCAACCGAAAGTTGTTTAACCTCACATGAGAGCTCTGGAGGATTGGCTTTAGAAGGATCTCCAAGTGCCGGAAAACGGAGAATGCTCGGCATGGACTCAATGACAGCACCTTTGATTTGGAGTGAAGCTAAGATGAAAACTCAAGCCATTAATTTAGGTCAAGGTAATCATCCTCTTGGAATAACTAGGTATGGTGGCTTGTAA 966 0.442 MYPRLIHPHEGIVVGQDDLQGGGVVGGGVSNHKGDPCLVLTADPKPRLRWTQDLHERFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQSGKDIGEGCKDGMTGSYLLESPGTDNSSPKLPTSDTNEGYEIKEALRAQMEVQSKLHLQVEAEKHLQIRQDAERRYMAMLERACKMLADQFIGATVIDTDSQKFQGIENKPPRGSLVDHLGFYSLPPSTEVAGVNVPEEEIPPTLPPQRADCSTESCLTSHESSGGLALEGSPSAGKRRMLGMDSMTAPLIWSEAKMKTQAINLGQGNHPLGITRYGGL 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01275 321 Pfam MYB-CC type transfactor, LHEQLE motif 143 188 IPR025756 -
Trre3g01275 321 MobiDBLite consensus disorder prediction 251 269 - -
Trre3g01275 321 FunFam Myb family transcription factor 44 102 - -
Trre3g01275 321 Pfam Myb-like DNA-binding domain 48 98 IPR001005 -
Trre3g01275 321 NCBIfam myb-like DNA-binding domain, SHAQKYF class 45 100 IPR006447 GO:0003677
Trre3g01275 321 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 26 272 IPR044848 GO:0003700
Trre3g01275 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 42 102 IPR017930 -
Trre3g01275 321 MobiDBLite consensus disorder prediction 243 280 - -
Trre3g01275 321 SUPERFAMILY Homeodomain-like 45 101 IPR009057 -
Trre3g01275 321 Gene3D - 44 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01275 Trre-Chr3 9658102 9661944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01275 22 262 G2-like Transcription Factor Family AT3G24120 44.747 2.87e-63 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre3g01275 Myb_DNA-binding 3.4e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01275 - - gmx:100782369 541.962